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CsGy6G021990 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G021990
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionProtein trichome birefringence-like 43
Genome locationGy14Chr6:22561370..22561681
RNA-Seq ExpressionCsGy6G021990
SyntenyCsGy6G021990
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0016413 - O-acetyltransferase activity (molecular function)
InterPro domainsIPR025846 - PMR5 N-terminal domain
IPR029962 - Trichome birefringence-like family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061666.1 protein trichome birefringence-like 43 [Cucumis melo var. makuwa]3.45e-5087.1Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        MSGSAKDCVALFLLLL   P LL+QE VEGKPVIG CDLFQGRWLADTSYPLYDVS CPFIEKQFDC+GNGR DKLYLRYRWQPSGC LPR D
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

XP_008449501.1 PREDICTED: protein trichome birefringence-like 43 [Cucumis melo]2.92e-4886.02Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        MSGSAKDCVALFLLLL   P LL+QE VEGKPVIG CDLFQGRWLADTSYPLYDVS CPFIEKQFDC+GNGR DKLYLRYRWQPSGC LPR +
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

XP_011657557.1 protein trichome birefringence-like 43 [Cucumis sativus]1.30e-6098.92Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR D
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

XP_038887447.1 protein trichome birefringence-like 43 isoform X1 [Benincasa hispida]6.11e-4073.12Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        MSGSA   VALFL+L    PSLL+QE V+GKP+IG CDLFQGRW+AD SYPLY+VS CPF+EK+FDCLGNGR D+LYLRYRWQP GC LPR +
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

XP_038887449.1 protein trichome birefringence-like 43 isoform X2 [Benincasa hispida]1.85e-4073.12Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        MSGSA   VALFL+L    PSLL+QE V+GKP+IG CDLFQGRW+AD SYPLY+VS CPF+EK+FDCLGNGR D+LYLRYRWQP GC LPR +
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

TrEMBL top hitse value%identityAlignment
A0A0A0KEN3 PMR5N domain-containing protein6.29e-6198.92Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR D
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

A0A1S3BMT5 protein trichome birefringence-like 431.41e-4886.02Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        MSGSAKDCVALFLLLL   P LL+QE VEGKPVIG CDLFQGRWLADTSYPLYDVS CPFIEKQFDC+GNGR DKLYLRYRWQPSGC LPR +
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

A0A5D3DBW8 Protein trichome birefringence-like 431.67e-5087.1Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        MSGSAKDCVALFLLLL   P LL+QE VEGKPVIG CDLFQGRWLADTSYPLYDVS CPFIEKQFDC+GNGR DKLYLRYRWQPSGC LPR D
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

A0A6J1GMA9 protein trichome birefringence-like 432.26e-3565.59Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        M  SA  CVALFLLL    P LL Q+   GKP +G CD FQG+W+AD SYPLYD S CPF++K+FDC GNGR DKLYL YRWQPSGC LPR +
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

A0A6J1HZL9 protein trichome birefringence-like 433.79e-3766.67Show/hide
Query:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        M  SA  CVALFLLL    P LL Q+   GKP +G CD FQG+W+AD SYPLYD S CPF++K+FDCLGNGR DKLYL YRWQPSGC LPR +
Subjt:  MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

SwissProt top hitse value%identityAlignment
F4I037 Protein trichome berefringence-like 76.0e-1757.14Show/hide
Query:  ECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR
        ECD+F G W+ D +YPLY+ S CPF+EK F+CLGNGR    YL++RW+P  C +PR
Subjt:  ECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR

F4IWA8 Protein trichome birefringence-like 411.7e-1651.14Show/hide
Query:  SAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR
        S    + L LLLLLLLP  L  E  EG      CD+F GRW+ D SYPLY+ S CPFI  +F C  NGR D  Y  +RWQP  C L R
Subjt:  SAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR

O22960 Protein trichome birefringence-like 379.9e-2053.62Show/hide
Query:  QELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        +E+++G+     C+LFQGRW+ D SYP YD S CPFI+ +FDCL  GR DK +L+Y WQP  C +PR D
Subjt:  QELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

Q6DR10 Protein trichome birefringence-like 434.9e-1948.89Show/hide
Query:  SGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR
        +G     V + L+LL  + S        G P    C+++QG W+ D SYPLYD   CPFIE+QF+C  NGR D  YL+YRWQPSGC LPR
Subjt:  SGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR

Q8VY22 Protein trichome birefringence-like 387.1e-1861.4Show/hide
Query:  CDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        C+LFQGRW+ D SYP YD S CPFI+ +FDCL  GR DK +L+Y WQP  C +PR D
Subjt:  CDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

Arabidopsis top hitse value%identityAlignment
AT1G29050.1 TRICHOME BIREFRINGENCE-LIKE 385.0e-1961.4Show/hide
Query:  CDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        C+LFQGRW+ D SYP YD S CPFI+ +FDCL  GR DK +L+Y WQP  C +PR D
Subjt:  CDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

AT1G48880.1 TRICHOME BIREFRINGENCE-LIKE 74.2e-1857.14Show/hide
Query:  ECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR
        ECD+F G W+ D +YPLY+ S CPF+EK F+CLGNGR    YL++RW+P  C +PR
Subjt:  ECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR

AT2G30900.1 TRICHOME BIREFRINGENCE-LIKE 433.5e-2048.89Show/hide
Query:  SGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR
        +G     V + L+LL  + S        G P    C+++QG W+ D SYPLYD   CPFIE+QF+C  NGR D  YL+YRWQPSGC LPR
Subjt:  SGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR

AT2G34070.1 TRICHOME BIREFRINGENCE-LIKE 377.0e-2153.62Show/hide
Query:  QELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD
        +E+++G+     C+LFQGRW+ D SYP YD S CPFI+ +FDCL  GR DK +L+Y WQP  C +PR D
Subjt:  QELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSD

AT3G14850.2 TRICHOME BIREFRINGENCE-LIKE 411.2e-1751.14Show/hide
Query:  SAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR
        S    + L LLLLLLLP  L  E  EG      CD+F GRW+ D SYPLY+ S CPFI  +F C  NGR D  Y  +RWQP  C L R
Subjt:  SAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGCTCTGCAAAAGATTGTGTTGCTCTGTTTCTTCTTCTTCTTCTTCTACTGCCTTCTCTTCTTTTTCAAGAATTAGTTGAAGGAAAGCCGGTGATTGGTGAATG
CGATCTTTTTCAAGGGAGATGGTTGGCCGATACGTCGTACCCTCTTTACGACGTGTCGGCTTGTCCTTTTATTGAGAAACAATTTGATTGCCTTGGAAATGGCCGCCTCG
ATAAACTCTATCTCCGATACCGGTGGCAGCCCTCCGGCTGCTTCTTGCCCAGGTCAGATCCCTCCCCCGTCCCCTTCTTTTGTAAGTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGCTCTGCAAAAGATTGTGTTGCTCTGTTTCTTCTTCTTCTTCTTCTACTGCCTTCTCTTCTTTTTCAAGAATTAGTTGAAGGAAAGCCGGTGATTGGTGAATG
CGATCTTTTTCAAGGGAGATGGTTGGCCGATACGTCGTACCCTCTTTACGACGTGTCGGCTTGTCCTTTTATTGAGAAACAATTTGATTGCCTTGGAAATGGCCGCCTCG
ATAAACTCTATCTCCGATACCGGTGGCAGCCCTCCGGCTGCTTCTTGCCCAGGTCAGATCCCTCCCCCGTCCCCTTCTTTTGTAAGTTATAA
Protein sequenceShow/hide protein sequence
MSGSAKDCVALFLLLLLLLPSLLFQELVEGKPVIGECDLFQGRWLADTSYPLYDVSACPFIEKQFDCLGNGRLDKLYLRYRWQPSGCFLPRSDPSPVPFFCKL