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CsGy6G024220 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy6G024220
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description60S ribosomal protein L23
Genome locationGy14Chr6:24128973..24129675
RNA-Seq ExpressionCsGy6G024220
SyntenyCsGy6G024220
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000218 - Ribosomal protein L14P
IPR036853 - Ribosomal protein L14 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEC11015.1 ribosomal protein L23, partial [Camellia sinensis]4.88e-2287.5Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKV+PAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

KAE8647409.1 hypothetical protein Csa_004093, partial [Cucumis sativus]5.93e-3996.92Show/hide
Query:  MCRLYLSRDCISCIDVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAITWGF
        MCRLYLSRDCISCID RKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT GF
Subjt:  MCRLYLSRDCISCIDVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAITWGF

TYH63268.1 hypothetical protein ES332_D07G179700v1 [Gossypium tomentosum]4.69e-2287.5Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGV+MYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

WP_016943998.1 uL14 family ribosomal protein, partial [Dickeya zeae]1.48e-2289.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

XP_013589007.1 PREDICTED: 60S ribosomal protein L23-like [Brassica oleracea var. oleracea]1.74e-2289.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

TrEMBL top hitse value%identityAlignment
A0A078DBI9 BnaA01g33580D protein8.43e-2389.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

A0A0D3AFN0 Uncharacterized protein8.43e-2389.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

A0A398A2Z0 Uncharacterized protein (Fragment)2.57e-2289.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

A0A5D2K7Y2 Uncharacterized protein2.27e-2287.5Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGV+MYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

F4YFF4 Ribosomal protein L23 (Fragment)2.36e-2287.5Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKV+PAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

SwissProt top hitse value%identityAlignment
P0CT60 60S ribosomal protein L23-A4.9e-1775Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKK++PA++ RQ   W RKDGV++YFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

P0CT61 60S ribosomal protein L23-B4.9e-1775Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKK++PA++ RQ   W RKDGV++YFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

P49690 60S ribosomal protein L233.1e-1989.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

Q07760 60S ribosomal protein L235.8e-1883.33Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKV+PAV+ RQ  PW RKDGVFMYFEDNAGVIVN KGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

Q9XEK8 60S ribosomal protein L231.7e-1783.33Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKV+PAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEM  SAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

Arabidopsis top hitse value%identityAlignment
AT1G04480.1 Ribosomal protein L14p/L23e family protein2.2e-2089.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

AT2G33370.1 Ribosomal protein L14p/L23e family protein2.2e-2089.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

AT3G04400.1 Ribosomal protein L14p/L23e family protein2.2e-2089.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT

AT3G04400.2 Ribosomal protein L14p/L23e family protein2.2e-2089.58Show/hide
Query:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT
        D+RKKVLPAVI RQ  PW RKDGVFMYFEDNAGVIVNPKGEMKGSAIT
Subjt:  DVRKKVLPAVIARQSNPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAIT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCTTCTGGATGATGAACATCATCGTTACCTTGTAAGTCACTTTAAGCTTTCACTATATTCCGATGTTCAAGCAAATTTGCGACAATCTAGCAAACTCTCCCCTTA
CAAAATCTATATCCACCGCAGTTCCTTCCTCTTCGATATCGATTACAAGCCCCAATATTTGCTTGTCGCTGATTCCCGTCCGGTGATTGAGCGAAACCCTAAGTGGAGCC
GGCGAGAAAATGCGAGGGTCATGTGTCGCTTGTATCTATCTCGAGATTGCATCAGTTGCATTGACGTCAGGAAGAAGGTGCTACCTGCTGTTATTGCTAGGCAGAGCAAC
CCATGGCACCGAAAGGATGGTGTCTTCATGTACTTCGAAGACAATGCTGGTGTCATCGTAAACCCCAAAGGAGAGATGAAGGGTTCTGCTATTACATGGGGGTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCTTCTGGATGATGAACATCATCGTTACCTTGTAAGTCACTTTAAGCTTTCACTATATTCCGATGTTCAAGCAAATTTGCGACAATCTAGCAAACTCTCCCCTTA
CAAAATCTATATCCACCGCAGTTCCTTCCTCTTCGATATCGATTACAAGCCCCAATATTTGCTTGTCGCTGATTCCCGTCCGGTGATTGAGCGAAACCCTAAGTGGAGCC
GGCGAGAAAATGCGAGGGTCATGTGTCGCTTGTATCTATCTCGAGATTGCATCAGTTGCATTGACGTCAGGAAGAAGGTGCTACCTGCTGTTATTGCTAGGCAGAGCAAC
CCATGGCACCGAAAGGATGGTGTCTTCATGTACTTCGAAGACAATGCTGGTGTCATCGTAAACCCCAAAGGAGAGATGAAGGGTTCTGCTATTACATGGGGGTTCTAA
Protein sequenceShow/hide protein sequence
MFLLDDEHHRYLVSHFKLSLYSDVQANLRQSSKLSPYKIYIHRSSFLFDIDYKPQYLLVADSRPVIERNPKWSRRENARVMCRLYLSRDCISCIDVRKKVLPAVIARQSN
PWHRKDGVFMYFEDNAGVIVNPKGEMKGSAITWGF