CuGenDBv2

Gene ID	CsGy6G032840
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	Gy14Chr6:29866552..29868057
RNA-Seq Expression	CsGy6G032840
Synteny	CsGy6G032840
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0006457 - protein folding (biological process) GO:0006950 - response to stress (biological process) GO:0009628 - response to abiotic stimulus (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0003688 - DNA replication origin binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7026647.1 Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

2.22e-67

87.6

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Query:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCC-NCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKA
        GFGEASPE+KAA+NLHNFFTYVAVRIVTAQLEVALQLL C NCSAMLL     VLILVLVEQSYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK+
Subjt:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCC-NCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKA

Query:  LALRILEVRSAYCKNDFEWDNLKRLAFKV
        LALRILEVRSAYCKNDFEWDNLKRLA K+
Subjt:  LALRILEVRSAYCKNDFEWDNLKRLAFKV

KGN49472.2 hypothetical protein Csa_003132 [Cucumis sativus]

2.10e-76

80.67

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Query:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
        GFGEASPESKAARNLHNFFTYVAVRIVTAQLE                             SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
Subjt:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL

Query:  ALRILEVRSAYCKNDFEWDNLKRLAFKVRKTRTFLCHFPNSIMISCLLPY
        ALRILEVRSAYCKNDFEWDNLKRLAFKVRKTRTFLCHFPNSIMISCLLPY
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLAFKVRKTRTFLCHFPNSIMISCLLPY

XP_004134778.1 chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]

1.77e-56

76.56

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Query:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
        GFGEASPESKAARNLHNFFTYVAVRIVTAQLE                             SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
Subjt:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL

Query:  ALRILEVRSAYCKNDFEWDNLKRLAFKV
        ALRILEVRSAYCKNDFEWDNLKRLAFK+
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLAFKV

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]

5.06e-56

75.78

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Query:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
        GFGEASPESKAARNLHNFFTYVAVRIVTAQLE                             SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK+L
Subjt:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL

Query:  ALRILEVRSAYCKNDFEWDNLKRLAFKV
        ALRILEVRSAYCKNDFEWDNLKRLAFK+
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLAFKV

XP_038881665.1 chaperonin-like RBCX protein 1, chloroplastic isoform X2 [Benincasa hispida]

1.15e-55

67.59

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Query:  IPDVCLFVCLFICVQKLGFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDG
        +P +C       C+    FGEASPESKAARNLHNFFTYVAVRIVTAQLE                             SYNPEAY ELMEFLDRHSLNDG
Subjt:  IPDVCLFVCLFICVQKLGFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDG

Query:  DKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKV
        DKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFK+
Subjt:  DKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMZ4 Uncharacterized protein

8.58e-57

76.56

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Query:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
        GFGEASPESKAARNLHNFFTYVAVRIVTAQLE                             SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
Subjt:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL

Query:  ALRILEVRSAYCKNDFEWDNLKRLAFKV
        ALRILEVRSAYCKNDFEWDNLKRLAFK+
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLAFKV

A0A1S3B054 uncharacterized protein LOC103484635

2.45e-56

75.78

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Query:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
        GFGEASPESKAARNLHNFFTYVAVRIVTAQLE                             SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK+L
Subjt:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL

Query:  ALRILEVRSAYCKNDFEWDNLKRLAFKV
        ALRILEVRSAYCKNDFEWDNLKRLAFK+
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLAFKV

A0A5D3CNU4 Chaperonin-like RBCX protein 1

2.45e-56

75.78

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Query:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
        GFGEASPESKAARNLHNFFTYVAVRIVTAQLE                             SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK+L
Subjt:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL

Query:  ALRILEVRSAYCKNDFEWDNLKRLAFKV
        ALRILEVRSAYCKNDFEWDNLKRLAFK+
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLAFKV

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic

4.62e-52

71.09

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Query:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
        GFGEASPE+KAA+NLHNFFTYVAVRIV AQLE                             SYNPEA++ELMEFLDRHSLNDGDKFLASLMRESSRHK+L
Subjt:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL

Query:  ALRILEVRSAYCKNDFEWDNLKRLAFKV
        ALRILEVRSAYCKNDFEWDNLKRLA K+
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLAFKV

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

8.44e-52

70.31

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Query:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL
        GFGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                             SYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK+L
Subjt:  GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL

Query:  ALRILEVRSAYCKNDFEWDNLKRLAFKV
        ALRILEVRSAYCKNDFEWDNLKRLA K+
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLAFKV

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

2.4e-37

61.76

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Query:  ICVQKL---GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLM
        IC  K+   GFGEASPE+KAA++LH+FFTYVAVRIV+AQLE                             SYNPEAY+EL EFLD +S++DGDKF A+LM
Subjt:  ICVQKL---GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLM

Query:  RESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFK
        R SSRH  LALRILEVRSAYCKNDFEWDN+KRLAFK
Subjt:  RESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFK

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

1.7e-38

61.76

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Query:  ICVQKL---GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLM
        IC  K+   GFGEASPE+KAA++LH+FFTYVAVRIV+AQLE                             SYNPEAY+EL EFLD +S++DGDKF A+LM
Subjt:  ICVQKL---GFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLM

Query:  RESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFK
        R SSRH  LALRILEVRSAYCKNDFEWDN+KRLAFK
Subjt:  RESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFK

Sequences

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CDS sequence

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ATGTCCCCGGTGGGTTCTCTCTCTCTCTCTCTCTTTCATTCTATTTTTATCCCAGATGTTTGTTTGTTTGTTTGTTTGTTTATCTGTGTTCAAAAATTAGGGTTT
GGAGAGGCCTCACCAGAATCCAAGGCAGCCAGAAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTG
CTTTGTTGTAATTGCTCTGCCATGTTGTTGTGTGGGTTTTCATTGGTATTGATTCTTGTTTTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCTGGAGTTAATG
GAGTTTCTCGATAGACATTCACTGAATGATGGGGACAAATTTCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAAGCTCTTGCATTGCGTATACTAGAGGTT
CGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAGTAAGAAAAACTCGTACATTTCTCTGCCATTTTCCTAACAGCATT
ATGATCAGTTGCTTGCTACCCTACTGA

mRNA sequence

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GCTAAAGATATTTGATTTGGAACTGATACAGTAAGCACAAGCTTTGGAACTATCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTGTGG
TTCCAGTTTTCTTCTGAAGTAATTTGCAATGGAATCATCAGCAAGGATTCTTTCTCCTACTCAGTTCCCTTCTCTTTTCTCACTACCAAATTTAAACAGAGGCAA
TGTTTTTCCTGTTAGGCCAATAAAGCCAAGAGCTTTCAAGCCTATGCGCTTGCATTGCAGTAAGATGTATGTCCCCGGTGGGTTCTCTCTCTCTCTCTCTCTTTC
ATTCTATTTTTATCCCAGATGTTTGTTTGTTTGTTTGTTTGTTTATCTGTGTTCAAAAATTAGGGTTTGGAGAGGCCTCACCAGAATCCAAGGCAGCCAGAAATC
TGCACAATTTCTTCACGTATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTGCTTTGTTGTAATTGCTCTGCCATGTTGTTGTGTGGGT
TTTCATTGGTATTGATTCTTGTTTTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCTGGAGTTAATGGAGTTTCTCGATAGACATTCACTGAATGATGGGGACA
AATTTCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAAGCTCTTGCATTGCGTATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACA
ACCTCAAGCGATTAGCTTTCAAAGTAAGAAAAACTCGTACATTTCTCTGCCATTTTCCTAACAGCATTATGATCAGTTGCTTGCTACCCTACTGAGATTAATCAT
TGTTTTCAGATGGTTAGCGAATCCAACACAAGAATAATGAGGGAGTACTTGACAGAGACAAGTCCATCAGACACCGAGAAGTGACGAATTTCTGCATTGTGTTCA
CCTTTTGCAGCTAAACAGGAGGATACATAAATCCAGTGTGTATAATATGAGATGAGAGTGACAAAGAAAATGTAGCAAACCAAACCCAGTGTGGTAAAATATACA
AAAACATTCATTCTGAATTCTTCTCAAGAACTACAAAATAATATTTATGCAATTTAAATTACTCAATCGTTG

Protein sequence

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MSPVGSLSLSLFHSIFIPDVCLFVCLFICVQKLGFGEASPESKAARNLHNFFTYVAVRIVTAQLEVALQLLCCNCSAMLLCGFSLVLILVLVEQSYNPEAYLELM
EFLDRHSLNDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKVRKTRTFLCHFPNSIMISCLLPY

CsGy6G032840 (gene) of Cucumber (Gy14) v2.1 genome