; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy7G008077 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy7G008077
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionmeiotic recombination protein SPO11-1
Genome locationGy14Chr7:8203966..8204542
RNA-Seq ExpressionCsGy7G008077
SyntenyCsGy7G008077
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0030488 - tRNA methylation (biological process)
GO:0042138 - meiotic DNA double-strand break formation (biological process)
GO:0051026 - chiasma assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005694 - chromosome (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity (molecular function)
GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44213.2 hypothetical protein Csa_019092 [Cucumis sativus]2.07e-84100Show/hide
Query:  MITHFPFNVFDPFPFQKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVH
        MITHFPFNVFDPFPFQKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVH
Subjt:  MITHFPFNVFDPFPFQKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVH

Query:  NISFLSDEYLPSKIESELTLLNS
        NISFLSDEYLPSKIESELTLLNS
Subjt:  NISFLSDEYLPSKIESELTLLNS

XP_031744433.1 meiotic recombination protein SPO11-1-like isoform X3 [Cucumis sativus]3.13e-66100Show/hide
Query:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
        QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
Subjt:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE

Query:  LTLLNS
        LTLLNS
Subjt:  LTLLNS

XP_031744443.1 meiotic recombination protein SPO11-1-like isoform X3 [Cucumis sativus]2.31e-66100Show/hide
Query:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
        QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
Subjt:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE

Query:  LTLLNS
        LTLLNS
Subjt:  LTLLNS

XP_031744448.1 meiotic recombination protein SPO11-1-like isoform X8 [Cucumis sativus]4.69e-6073.1Show/hide
Query:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFK---------------------------------------DKSRTEALLQRCYLRREVQHW
        QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFK                                       DKSRTEALLQRCYLRREVQHW
Subjt:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFK---------------------------------------DKSRTEALLQRCYLRREVQHW

Query:  RLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELTLLNS
        RLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELTLLNS
Subjt:  RLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELTLLNS

XP_031745985.1 meiotic recombination protein SPO11-1-like isoform X3 [Cucumis sativus]6.62e-66100Show/hide
Query:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
        QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
Subjt:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE

Query:  LTLLNS
        LTLLNS
Subjt:  LTLLNS

TrEMBL top hitse value%identityAlignment
A0A1S3CI64 meiotic recombination protein SPO11-1 isoform X21.37e-5488.24Show/hide
Query:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
        QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTEALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESE
Subjt:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE

Query:  LT
        LT
Subjt:  LT

A0A1S3CJR6 meiotic recombination protein SPO11-1 isoform X11.47e-5488.24Show/hide
Query:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
        QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTEALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESE
Subjt:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE

Query:  LT
        LT
Subjt:  LT

A0A1S4E3Z9 meiotic recombination protein SPO11-1 isoform X36.29e-5588.24Show/hide
Query:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
        QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTEALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESE
Subjt:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE

Query:  LT
        LT
Subjt:  LT

A0A1S4E415 meiotic recombination protein SPO11-1 isoform X45.82e-5588.24Show/hide
Query:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
        QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTEALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESE
Subjt:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE

Query:  LT
        LT
Subjt:  LT

A0A6J1IGM0 meiotic recombination protein SPO11-11.66e-5487.25Show/hide
Query:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE
        QMAYDAKYL+IPQL WLGAFASD + YNLP+QCLIPLT +DK RTEALL RCYLRREV HWRLELESML+RGVKFEIEALSVHNISFLS+EYLPSKIESE
Subjt:  QMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE

Query:  LT
        LT
Subjt:  LT

SwissProt top hitse value%identityAlignment
A2XFC1 DNA topoisomerase 6 subunit A32.5e-1438.61Show/hide
Query:  KQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIES
        K M+YD+  L  P ++WLG   SD +KY +PEQC +P+T  D    + LL+  ++++  + W  ELE+ML    K EI+ALS     +L++ YLP K++ 
Subjt:  KQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIES

Query:  E
        +
Subjt:  E

Q0DSV9 Topoisomerase 6 subunit A32.5e-1438.61Show/hide
Query:  KQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIES
        K M+YD+  L  P ++WLG   SD +KY +PEQC +P+T  D    + LL+  ++++  + W  ELE+ML    K EI+ALS     +L++ YLP K++ 
Subjt:  KQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIES

Query:  E
        +
Subjt:  E

Q5ZPV8 Meiotic recombination protein SPO11-11.5e-3054.46Show/hide
Query:  FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNIS
        + F++   + F   Q+AYDA +L++P +RWLG F SDFE Y LP+ CL+ L+ +D+ + E +L RCYL RE   WRLELE+ML++GVKFEIEALS  +IS
Subjt:  FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNIS

Query:  FLSDEYLPSKIE
        FLS+EY+P KI+
Subjt:  FLSDEYLPSKIE

Q7Y021 Meiotic recombination protein SPO11-11.5e-3054.46Show/hide
Query:  FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNIS
        + F++   + F   Q+AYDA +L++P +RWLG F SDFE Y LP+ CL+ L+ +D+ + E +L RCYL RE   WRLELE+ML++GVKFEIEALS  +IS
Subjt:  FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNIS

Query:  FLSDEYLPSKIE
        FLS+EY+P KI+
Subjt:  FLSDEYLPSKIE

Q9M4A2 Meiotic recombination protein SPO11-12.9e-3459.48Show/hide
Query:  FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNIS
        + F +   + F   QMAYD + L+ P ++WLGAF SD E Y++P+QCL+PLT +DK RTEA+L RCYL+RE+  WRLELE+ML+RGVKFEIEALSVH++S
Subjt:  FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNIS

Query:  FLSDEYLPSKIESELT
        FLS+ Y+PSKI  E++
Subjt:  FLSDEYLPSKIESELT

Arabidopsis top hitse value%identityAlignment
AT1G63990.1 sporulation 11-24.2e-0432.14Show/hide
Query:  LRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKI
        ++W+G    D     +PE+ L+PL  KD    ++LL    L+   +++  EL  M++ G + EIEAL  H  ++L  +Y+ +KI
Subjt:  LRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKI

AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein2.0e-3559.48Show/hide
Query:  FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNIS
        + F +   + F   QMAYD + L+ P ++WLGAF SD E Y++P+QCL+PLT +DK RTEA+L RCYL+RE+  WRLELE+ML+RGVKFEIEALSVH++S
Subjt:  FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNIS

Query:  FLSDEYLPSKIESELT
        FLS+ Y+PSKI  E++
Subjt:  FLSDEYLPSKIESELT

AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein2.0e-1436.63Show/hide
Query:  KQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIES
        K M+YD+  L  P ++WLG   SD +KY +PEQC +P+T +D    + +L+  ++++    W  EL  M++   K EI+ALS     +LS+ YLP K++ 
Subjt:  KQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIES

Query:  E
        +
Subjt:  E


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAACTCACTTTCCCTTCAATGTTTTCGACCCATTTCCTTTCCAAAAGCAAATGGCCTACGATGCAAAGTATCTCAAAATCCCACAACTACGATGGCTTGGAGCTTT
TGCTTCAGATTTTGAGAAATACAATCTGCCAGAACAATGTCTCATCCCATTGACTTTCAAGGACAAGAGTAGAACTGAAGCCTTGTTACAAAGATGCTACTTGCGTAGAG
AGGTACAACATTGGAGGTTGGAATTGGAGTCAATGCTGGAAAGAGGGGTGAAATTTGAGATAGAAGCACTGTCTGTGCACAATATTTCATTTTTGTCCGACGAGTATTTA
CCATCCAAAATTGAAAGTGAACTAACACTGTTGAACTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGATAACTCACTTTCCCTTCAATGTTTTCGACCCATTTCCTTTCCAAAAGCAAATGGCCTACGATGCAAAGTATCTCAAAATCCCACAACTACGATGGCTTGGAGCTTT
TGCTTCAGATTTTGAGAAATACAATCTGCCAGAACAATGTCTCATCCCATTGACTTTCAAGGACAAGAGTAGAACTGAAGCCTTGTTACAAAGATGCTACTTGCGTAGAG
AGGTACAACATTGGAGGTTGGAATTGGAGTCAATGCTGGAAAGAGGGGTGAAATTTGAGATAGAAGCACTGTCTGTGCACAATATTTCATTTTTGTCCGACGAGTATTTA
CCATCCAAAATTGAAAGTGAACTAACACTGTTGAACTCATAG
Protein sequenceShow/hide protein sequence
MITHFPFNVFDPFPFQKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYL
PSKIESELTLLNS