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CsGy7G008080 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy7G008080
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionmeiotic recombination protein SPO11-1
Genome locationGy14Chr7:8204616..8205215
RNA-Seq ExpressionCsGy7G008080
SyntenyCsGy7G008080
Gene Ontology termsGO:0042138 - meiotic DNA double-strand break formation (biological process)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity (molecular function)
InterPro domainsIPR002815 - Spo11/DNA topoisomerase VI subunit A
IPR034136 - Topoisomerase 6 subunit A/Spo11, TOPRIM domain
IPR036078 - Spo11/DNA topoisomerase VI subunit A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44215.2 hypothetical protein Csa_019091 [Cucumis sativus]9.83e-56100Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRLLN
        DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRLLN
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRLLN

XP_031744436.1 meiotic recombination protein SPO11-1-like isoform X6 [Cucumis sativus]1.37e-5297.65Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRL
        DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM R+
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRL

XP_031744437.1 meiotic recombination protein SPO11-1-like isoform X7 [Cucumis sativus]1.20e-5297.65Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRL
        DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM R+
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRL

XP_031744446.1 meiotic recombination protein SPO11-1-like isoform X6 [Cucumis sativus]1.02e-5297.65Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRL
        DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM R+
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRL

XP_031744447.1 meiotic recombination protein SPO11-1-like isoform X7 [Cucumis sativus]8.84e-5397.65Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRL
        DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM R+
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRL

TrEMBL top hitse value%identityAlignment
A0A1S3CI64 meiotic recombination protein SPO11-1 isoform X22.30e-4996.34Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        DI +AADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVP+RRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

A0A1S3CJR6 meiotic recombination protein SPO11-1 isoform X12.46e-4996.34Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        DI +AADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVP+RRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

A0A1S4E3Z9 meiotic recombination protein SPO11-1 isoform X31.10e-4996.34Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        DI +AADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVP+RRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

A0A1S4E415 meiotic recombination protein SPO11-1 isoform X41.02e-4996.34Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        DI +AADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVP+RRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

A0A5D3CC45 Meiotic recombination protein SPO11-1 isoform X42.49e-4896.3Show/hide
Query:  ITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        I +AADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVP+RRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
Subjt:  ITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

SwissProt top hitse value%identityAlignment
Q5ZPV8 Meiotic recombination protein SPO11-12.7e-3476.83Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        D+ S ADYIL+VEKE+VFQRLAND+FC RNRCIVITGRGYPD+P+RRFLR LV+ L LP +CLVD DPYGFDIL TY+FGS+
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

Q7Y021 Meiotic recombination protein SPO11-12.7e-3476.83Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        D+ S ADYIL+VEKE+VFQRLAND+FC RNRCIVITGRGYPD+P+RRFLR LV+ L LP +CLVD DPYGFDIL TY+FGS+
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

Q9M4A2 Meiotic recombination protein SPO11-13.9e-3379.27Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        DI S A+YILVVEKE+VFQRLAND FC  NRCIVITGRGYPDV +RRFLRLL++ L LP  CLVDCDPYGF+IL TYRFGSM
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

Q9WTK8 Meiotic recombination protein SPO111.3e-1748.72Show/hide
Query:  ADYILVVEKESVFQRLANDRFCSR-NRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        A ++L+VEK++ FQRL +D FCSR + CI++TG+G PD+ +R  ++ L D   +P F LVD DPYG +I+  Y++GSM
Subjt:  ADYILVVEKESVFQRLANDRFCSR-NRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

Q9Y5K1 Meiotic recombination protein SPO111.1e-1643.37Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSR-NRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        ++ + A ++L+VEK++ FQRL +D FC++ + CI+ITG+G PD+ +R  ++ L D   +P F LVD DP+G +I+  Y++GSM
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSR-NRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

Arabidopsis top hitse value%identityAlignment
AT1G63990.1 sporulation 11-21.2e-1344.87Show/hide
Query:  ADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFL-RLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        A YI++VEK ++F RL  DR  +   C+ IT +GYPD+ +R FL R+      LP   LVD +P G  IL T++FGS+
Subjt:  ADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFL-RLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein2.7e-3479.27Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM
        DI S A+YILVVEKE+VFQRLAND FC  NRCIVITGRGYPDV +RRFLRLL++ L LP  CLVDCDPYGF+IL TYRFGSM
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSM

AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein1.4e-1750.62Show/hide
Query:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGS
        D+ S A +IL+VEK++ + RLA DRF +R  CI++T +G PDV +R FLR +   L LP   LVD DPYG  IL+ Y  GS
Subjt:  DITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCCAAGTATTACTCTTCTTAAAAGCATTTTGACCGAGTTCTCCATGCTTTATGATTATTTTTTATTTTTATATGCAGATATTACTAGTGCTGCAGATTACATACT
CGTTGTAGAGAAAGAATCAGTTTTTCAGCGTTTAGCAAATGACCGGTTCTGCAGCAGAAACCGGTGCATTGTAATCACGGGACGTGGATATCCAGATGTTCCCAGTAGAA
GGTTTTTGCGGCTTCTCGTTGATGTTTTGGCATTGCCTGCATTTTGTTTGGTAGATTGTGATCCATACGGTTTTGACATTCTGACGACATATCGTTTCGGTTCTATGGTT
AGACTCCTCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATCCAAGTATTACTCTTCTTAAAAGCATTTTGACCGAGTTCTCCATGCTTTATGATTATTTTTTATTTTTATATGCAGATATTACTAGTGCTGCAGATTACATACT
CGTTGTAGAGAAAGAATCAGTTTTTCAGCGTTTAGCAAATGACCGGTTCTGCAGCAGAAACCGGTGCATTGTAATCACGGGACGTGGATATCCAGATGTTCCCAGTAGAA
GGTTTTTGCGGCTTCTCGTTGATGTTTTGGCATTGCCTGCATTTTGTTTGGTAGATTGTGATCCATACGGTTTTGACATTCTGACGACATATCGTTTCGGTTCTATGGTT
AGACTCCTCAATTGA
Protein sequenceShow/hide protein sequence
MHPSITLLKSILTEFSMLYDYFLFLYADITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMV
RLLN