CuGenDBv2

Gene ID	CsGy7G008600
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RNA-binding protein 48
Genome location	Gy14Chr7:10126917..10127691
RNA-Seq Expression	CsGy7G008600
Synteny	CsGy7G008600
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR039599 - RNA-binding protein 48

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142975.1 RNA-binding protein 48 isoform X2 [Cucumis sativus]

4.88e-30

53.33

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------
        YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R    F       +++        L+ K  LE R R      
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------

Query:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK
              G AVSSTTAKLTN SRSHYTL+QKN LEK
Subjt:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK

XP_011649485.1 RNA-binding protein 48 isoform X1 [Cucumis sativus]

4.99e-30

53.33

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------
        YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R    F       +++        L+ K  LE R R      
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------

Query:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK
              G AVSSTTAKLTN SRSHYTL+QKN LEK
Subjt:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK

XP_022997623.1 RNA-binding protein 48 isoform X3 [Cucurbita maxima]

1.46e-29

43.03

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF-----------------------------------------------IWSPM
        YLIVR +PALG GD+L KLFSSY NLEECKPMDAEECDEFT+V+   F                                               + + +
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF-----------------------------------------------IWSPM

Query:  PVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSRS-----HYTLE
          GRPRG AV+S T K TNPS SHYTLEQKN LEKR  G A  S+   ++  +R      HY L+
Subjt:  PVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSRS-----HYTLE

XP_031736618.1 RNA-binding protein 48 isoform X3 [Cucumis sativus]

1.76e-30

53.33

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------
        YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R    F       +++        L+ K  LE R R      
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------

Query:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK
              G AVSSTTAKLTN SRSHYTL+QKN LEK
Subjt:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK

XP_031736619.1 RNA-binding protein 48 isoform X4 [Cucumis sativus]

1.72e-30

53.33

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------
        YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R    F       +++        L+ K  LE R R      
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------

Query:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK
              G AVSSTTAKLTN SRSHYTL+QKN LEK
Subjt:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQL2 RNA-binding protein 48

2.36e-30

53.33

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------
        YLIVR +PALG GDDLHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R    F       +++        L+ K  LE R R      
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------

Query:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK
              G AVSSTTAKLTN SRSHYTL+QKN LEK
Subjt:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLEK

A0A5A7V5K4 RNA-binding protein 48

2.46e-29

52.24

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------
        YLIVR +PALG GD LHKLFSSY NLEECKPMDAEECDEFT+V+   F  + +     R    F       +++        ++ K  LE R R      
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF--IWSPMPVGRPRG-FAVSSTTAKLTNPSRSHYTLEQKNFLEKRLR------

Query:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLE
              G AVSSTTAKLTNPSRS+YTLEQKN LE
Subjt:  ------GFAVSSTTAKLTNPSRSHYTLEQKNFLE

A0A6J1K5M2 RNA-binding protein 48

1.92e-29

44.16

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF-----------------------------------------------IWSPM
        YLIVR +PALG GD+L KLFSSY NLEECKPMDAEECDEFT+V+   F                                               + + +
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF-----------------------------------------------IWSPM

Query:  PVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSR
          GRPRG AV+S T K TNPS SHYTLEQKN LEKR  G A  S+   ++  +R
Subjt:  PVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSR

A0A6J1K7Z4 RNA-binding protein 48

2.46e-29

44.16

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF-----------------------------------------------IWSPM
        YLIVR +PALG GD+L KLFSSY NLEECKPMDAEECDEFT+V+   F                                               + + +
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF-----------------------------------------------IWSPM

Query:  PVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSR
          GRPRG AV+S T K TNPS SHYTLEQKN LEKR  G A  S+   ++  +R
Subjt:  PVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSR

A0A6J1KEG7 RNA-binding protein 48

7.09e-30

43.03

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF-----------------------------------------------IWSPM
        YLIVR +PALG GD+L KLFSSY NLEECKPMDAEECDEFT+V+   F                                               + + +
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF-----------------------------------------------IWSPM

Query:  PVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSRS-----HYTLE
          GRPRG AV+S T K TNPS SHYTLEQKN LEKR  G A  S+   ++  +R      HY L+
Subjt:  PVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSRS-----HYTLE

SwissProt top hits

e value

%identity

Alignment

A4FVJ7 RNA-binding protein 48

4.0e-04

39.58

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF
        YL+V+ +PA+G   +L +LF+ Y  +EE +P+D    ++FT V+L  F
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF

Arabidopsis top hits

e value

%identity

Alignment

AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.7e-13

62.5

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF
        Y+IVR +PALG GDDL +LF +Y  +EECKPMDAE+C EFT+V+   F
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF

AT2G27790.2 RNA-binding (RRM/RBD/RNP motifs) family protein

3.7e-13

62.5

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF
        Y+IVR +PALG GDDL +LF +Y  +EECKPMDAE+C EFT+V+   F
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF

AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein

3.7e-13

62.5

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF
        Y+IVR +PALG GDDL +LF +Y  +EECKPMDAE+C EFT+V+   F
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF

AT5G27300.2 pentatricopeptide (PPR) repeat-containing protein

3.7e-13

62.5

Show/hide

Query:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF
        Y+IVR +PALG GDDL +LF +Y  +EECKPMDAE+C EFT+V+   F
Subjt:  YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TATTTGATTGTGAGGAAAATCCCAGCATTGGGTTATGGAGATGACTTGCACAAACTGTTCTCCTCCTACAGGAACCTCGAAGAGTGTAAACCCATGGATGCCGAAGAGTG
TGATGAATTCACAAATGTTTTTTTGTCAAATTTCATTTGGTCACCAATGCCAGTTGGTAGACCAAGAGGATTTGCAGTTAGTTCAACAACTGCAAAGCTTACAAATCCTT
CTCGCTCTCATTATACTCTTGAACAGAAGAACTTTCTCGAAAAGAGACTAAGAGGATTTGCAGTTAGTTCAACAACTGCAAAGCTTACAAATCCTTCTCGCTCTCATTAT
ACTCTTGAACAGAAGAACTTTCTCGAAAAGAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

YLIVRKIPALGYGDDLHKLFSSYRNLEECKPMDAEECDEFTNVFLSNFIWSPMPVGRPRGFAVSSTTAKLTNPSRSHYTLEQKNFLEKRLRGFAVSSTTAKLTNPSRSHY
TLEQKNFLEKX

CsGy7G008600 (gene) of Cucumber (Gy14) v2.1 genome