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CsGy7G008690 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy7G008690
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description60S ribosomal protein L38
Genome locationGy14Chr7:10613199..10615579
RNA-Seq ExpressionCsGy7G008690
SyntenyCsGy7G008690
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2959837.1 60S ribosomal L38-like [Olea europaea subsp. europaea]2.00e-1868.06Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLE--GRQVEAIPSTRDGVVRGKN
        MPKQIHEIK FLL ARRKDARSVKIK+SKDVVKFKVRCSKYLYTLS   LE   +  +++P     V+ G N
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLE--GRQVEAIPSTRDGVVRGKN

KAE8646019.1 hypothetical protein Csa_015924 [Cucumis sativus]2.75e-6266.29Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTR-----DGVVRGKNHKSCVAEAYIVGDFELAMSREQFKN
        MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTR      G++  K  K+ +    ++    L       K 
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTR-----DGVVRGKNHKSCVAEAYIVGDFELAMSREQFKN

Query:  Q------YDQKAHK--------AILKQLNLHSIAGGLALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKKV
               YD   H+          L    + SIAGGLALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKKV
Subjt:  Q------YDQKAHK--------AILKQLNLHSIAGGLALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKKV

KAE9620435.1 putative ribosomal protein L38e [Lupinus albus]3.11e-1895.65Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
        MPKQIHEIK FLL ARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS

KAG2285043.1 hypothetical protein Bca52824_044647 [Brassica carinata]4.27e-1891.49Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSF
        MPKQIHEIK FLL ARRKDARSVKIKRSKD+VKFKVRCSKYLYTL F
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSF

XP_019413806.1 PREDICTED: 60S ribosomal protein L38-like [Lupinus angustifolius]3.11e-1895.65Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
        MPKQIHEIK FLL ARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS

TrEMBL top hitse value%identityAlignment
A0A0A0K2Z5 60S ribosomal protein L381.70e-12289.35Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTR-----------DGVVRGKNHKSCVAEAYIVGDFELAMS
        MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTR           DGVVRGKNHKSCVAEAYIVGDFELAMS
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTR-----------DGVVRGKNHKSCVAEAYIVGDFELAMS

Query:  REQFKNQY-----------DQKAHKAILKQLNLHSIAGGLALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKK-VYGKEQVLKFKLMLIFFRY
        REQFKNQY           DQKAHKAILKQLNLHSIAGGLALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKK VYGKEQVLKFKLMLIFFRY
Subjt:  REQFKNQY-----------DQKAHKAILKQLNLHSIAGGLALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKK-VYGKEQVLKFKLMLIFFRY

Query:  HFSVFTNLLFLMILRQ
        HFSVFTNLLFLMILRQ
Subjt:  HFSVFTNLLFLMILRQ

A0A314XWM2 Putative 60S ribosomal protein L383.67e-1869.01Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS-FRLLEGRQVEAIPSTRDGVVRGKN
        MPKQIHEIK FLL ARRKDARSVKIKRSKD VKFKVRCSKY YTL  F   +  + EA+PS+R    R  N
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS-FRLLEGRQVEAIPSTRDGVVRGKN

A0A4P1R1U4 Uncharacterized protein1.50e-1895.65Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
        MPKQIHEIK FLL ARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS

A0A6A4QSI4 Putative ribosomal protein L38e4.23e-1893.48Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
        MPK+IHEIK FLL ARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS

A0A6A4R058 Putative ribosomal protein L38e1.50e-1895.65Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
        MPKQIHEIK FLL ARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLS

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L381.6e-1591.11Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDARSVKIKRSKD+VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

P46291 60S ribosomal protein L381.4e-1486.67Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDAR+VKIK++KD+VKFKVRCSKYLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

P63173 60S ribosomal protein L384.8e-1277.78Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MP++I EIK FLL ARRKDA+SVKIK++KD VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

Q32PB9 60S ribosomal protein L384.8e-1277.78Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MP++I EIK FLL ARRKDA+SVKIK++KD VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

Q95V84 60S ribosomal protein L388.8e-1484.44Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDA+SVKIK++KD VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

Arabidopsis top hitse value%identityAlignment
AT1G30820.1 CTP synthase family protein7.0e-0660Show/hide
Query:  DQKAHKAILKQLNLHSIAGGLALEEWTARAKMYDSLHEPV
        DQKAH AI K LNL SI    +L EWT+RA++ D+LH PV
Subjt:  DQKAHKAILKQLNLHSIAGGLALEEWTARAKMYDSLHEPV

AT2G43460.1 Ribosomal L38e protein family1.1e-1691.11Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDARSVKIKRSKD+VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

AT3G59540.1 Ribosomal L38e protein family1.1e-1691.11Show/hide
Query:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL
        MPKQIHEIK FLL ARRKDARSVKIKRSKD+VKFKVRCS+YLYTL
Subjt:  MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTL

AT4G20320.1 CTP synthase family protein4.1e-0657.5Show/hide
Query:  DQKAHKAILKQLNLHSIAGGLALEEWTARAKMYDSLHEPV
        +QKAH+AI + LNL  +A   ALEEW+  AKM D LH PV
Subjt:  DQKAHKAILKQLNLHSIAGGLALEEWTARAKMYDSLHEPV

AT4G20320.2 CTP synthase family protein4.1e-0657.5Show/hide
Query:  DQKAHKAILKQLNLHSIAGGLALEEWTARAKMYDSLHEPV
        +QKAH+AI + LNL  +A   ALEEW+  AKM D LH PV
Subjt:  DQKAHKAILKQLNLHSIAGGLALEEWTARAKMYDSLHEPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAACAAATTCATGAGATCAAAGGTTTCCTTCTCGCTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCG
ATGCTCCAAATATCTTTATACTTTGTCTTTTCGACTCTTAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGAGATGGGGTTGTTAGAGGAAAAAATCACAAAAGCT
GTGTTGCAGAGGCCTACATTGTTGGAGACTTCGAGCTTGCTATGTCAAGAGAACAATTTAAAAATCAGTATGATCAAAAGGCGCATAAAGCAATCTTGAAACAGCTGAAT
CTTCACAGTATAGCTGGTGGTCTCGCTTTAGAGGAGTGGACTGCTAGGGCCAAAATGTATGATTCACTACATGAACCGGTAGAGAATAGGAGAGGTTTTGGTGATCTGGA
AGACGATGAGGACGACTTCTTTATCTCCAAAAAGGTCTATGGGAAGGAACAAGTTCTAAAGTTCAAACTGATGCTGATATTCTTCAGGTACCACTTTTCTGTTTTCACAA
ATTTGTTGTTTTTAATGATTCTAAGACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAACAAATTCATGAGATCAAAGGTTTCCTTCTCGCTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCG
ATGCTCCAAATATCTTTATACTTTGTCTTTTCGACTCTTAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGAGATGGGGTTGTTAGAGGAAAAAATCACAAAAGCT
GTGTTGCAGAGGCCTACATTGTTGGAGACTTCGAGCTTGCTATGTCAAGAGAACAATTTAAAAATCAGTATGATCAAAAGGCGCATAAAGCAATCTTGAAACAGCTGAAT
CTTCACAGTATAGCTGGTGGTCTCGCTTTAGAGGAGTGGACTGCTAGGGCCAAAATGTATGATTCACTACATGAACCGGTAGAGAATAGGAGAGGTTTTGGTGATCTGGA
AGACGATGAGGACGACTTCTTTATCTCCAAAAAGGTCTATGGGAAGGAACAAGTTCTAAAGTTCAAACTGATGCTGATATTCTTCAGGTACCACTTTTCTGTTTTCACAA
ATTTGTTGTTTTTAATGATTCTAAGACAGTGA
Protein sequenceShow/hide protein sequence
MPKQIHEIKGFLLAARRKDARSVKIKRSKDVVKFKVRCSKYLYTLSFRLLEGRQVEAIPSTRDGVVRGKNHKSCVAEAYIVGDFELAMSREQFKNQYDQKAHKAILKQLN
LHSIAGGLALEEWTARAKMYDSLHEPVENRRGFGDLEDDEDDFFISKKVYGKEQVLKFKLMLIFFRYHFSVFTNLLFLMILRQ