CuGenDBv2

Gene ID	CsGy7G012590
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330
Genome location	Gy14Chr7:16270486..16270780
RNA-Seq Expression	CsGy7G012590
Synteny	CsGy7G012590
Gene Ontology terms	GO:0032468 - Golgi calcium ion homeostasis (biological process) GO:0032472 - Golgi calcium ion transport (biological process) GO:0070588 - calcium ion transmembrane transport (biological process) GO:0071421 - manganese ion transmembrane transport (biological process) GO:0005794 - Golgi apparatus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005384 - manganese ion transmembrane transporter activity (molecular function) GO:0015085 - calcium ion transmembrane transporter activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049878.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

1.34e-12

70.69

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Query:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS
        MGLRSNPT TLS   FS SF        LFAS+QVYSAE EKDELDGPKDLGR SK+S
Subjt:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS

KAE8646234.1 hypothetical protein Csa_016443 [Cucumis sativus]

1.38e-41

100

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Query:  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPWLEVGLGLY
        MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPWLEVGLGLY
Subjt:  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPWLEVGLGLY

KGN61261.1 hypothetical protein Csa_006241 [Cucumis sativus]

2.60e-13

74.14

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Query:  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDELDGPKDLGRCSKVS
        MGLRSNPTATLS   FS+SF     F  LFAS QVYSAEVEKD+LDGPKDLGR SK+S
Subjt:  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDELDGPKDLGRCSKVS

XP_011648996.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus]

5.00e-13

74.14

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Query:  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDELDGPKDLGRCSKVS
        MGLRSNPTATLS   FS+SF     F  LFAS QVYSAEVEKD+LDGPKDLGR SK+S
Subjt:  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDELDGPKDLGRCSKVS

XP_038889550.1 GDT1-like protein 4 [Benincasa hispida]

1.87e-13

74.14

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Query:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS
        MGLRSNPTA LS   FSSSF        LFAS+QVYSAEVEKDELDGPKDLGR SK+S
Subjt:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4H3 Uncharacterized protein

9.73e-26

92.73

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Query:  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTI
        MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKD+LDGPKDLGRCSK S +
Subjt:  MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTI

A0A0A0LMQ4 GDT1 family protein

1.26e-13

74.14

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Query:  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDELDGPKDLGRCSKVS
        MGLRSNPTATLS   FS+SF     F  LFAS QVYSAEVEKD+LDGPKDLGR SK+S
Subjt:  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDELDGPKDLGRCSKVS

A0A1S3B4E3 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330

1.15e-12

70.69

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Query:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS
        MGLRSNPT TLS   FS SF        LFAS+QVYSAE EKDELDGPKDLGR SK+S
Subjt:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS

A0A5A7U3P6 GDT1 family protein

6.50e-13

70.69

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Query:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS
        MGLRSNPT TLS   FS SF        LFAS+QVYSAE EKDELDGPKDLGR SK+S
Subjt:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS

A0A6J1KA70 putative pentatricopeptide repeat-containing protein At3g23330

2.62e-11

68.97

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Query:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS
        MGLRSNPT  LS   FS S         LFASVQVYSAEVEK+ELDGPKDLGR SK+S
Subjt:  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDELDGPKDLGRCSKVS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTCCTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTGTATTCTGCGGAAGTG
GAGAAAGATGAGTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACAATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGA

mRNA sequence

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Protein sequence

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MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDELDGPKDLGRCSKVSTIPCRPWLEVGLGLY

CsGy7G012590 (gene) of Cucumber (Gy14) v2.1 genome