CuGenDBv2

Gene ID	CsGy7G016060
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Genome location	Gy14Chr7:19818244..19820550
RNA-Seq Expression	CsGy7G016060
Synteny	CsGy7G016060
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

1.38e-218

93.1

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYFKSKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

TYK18147.1 uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]

1.17e-215

92.16

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYFKSKG VSF+S  R PWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

XP_004136166.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucumis sativus]

5.02e-234

100

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLGDLKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

3.95e-218

92.79

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

2.11e-218

92.79

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAY7 Uncharacterized protein

2.43e-234

100

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLGDLKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

1.02e-218

92.79

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

1.91e-218

92.79

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYF+SKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

A0A5A7VN29 Uncharacterized protein

6.67e-219

93.1

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYFKSKG VSF+SHFRVPWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

A0A5D3D2J4 Uncharacterized protein

5.65e-216

92.16

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA
        MLATFPTSSVVSSSHS EFINVFYFKSKG VSF+S  R PWR +RNIQPSLGDPCIKMKST+IKCVKPTYQSLFEDNSIITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGA

Query:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSI+
Subjt:  IIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV
        LSEEPIEEPDVINMGIISG+D+FKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVIC+PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAV

Query:  KKNDFGPLGDLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGDLKRRMQNNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

3.2e-53

50.22

Show/hide

Query:  TDWEDQEGDIEE-MDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVI
        T  E +   I++ + SPWEGA++Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL   T D       TPV +SVDVTR+  +LRLDGIV+TVI
Subjt:  TDWEDQEGDIEE-MDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVI

Query:  TLNCYSCCEPAPECIFSNFSIILSEEPI-EEPDVINMGIISGKDMFKTDNGNSD----EDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVIC
        TL C+ C EPAP+ IF+NFS++L+E+P+ EEPD   +G I  +D    D G +      D ++ ID DD+L+FP  +KEIDISK+IRD++HLEIT++ +C
Subjt:  TLNCYSCCEPAPECIFSNFSIILSEEPI-EEPDVINMGIISGKDMFKTDNGNSD----EDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVIC

Query:  DPGCKGICLNCGINLN-TGSCKCSKQAVK
        +P CKG+CL CG NLN T SC C  + V+
Subjt:  DPGCKGICLNCGINLN-TGSCKCSKQAVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

1.7e-83

59.77

Show/hide

Query:  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   A   +  + +S  E ++I  DWEDQE +IE+  SPWEG+++Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C  C E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +  + D++D+  ID +D+L+FPP  KEIDI
Subjt:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI

Query:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ
        SK+IRD++HLEIT+  ICD  CKG+CL CG NLN   C C ++  K   +GPLG+L+ +MQ
Subjt:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

1.2e-84

59.77

Show/hide

Query:  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   A   +  + +S  E ++I  DWEDQE +IE+  SPWEG+++Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C  C E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +  + D++D+  ID +D+L+FPP  KEIDI
Subjt:  QISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGKDMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDI

Query:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ
        SK+IRD++HLEIT+  ICD  CKG+CL CG NLN   C C ++  K   +GPLG+L+ +MQ
Subjt:  SKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAATGTATTCTACTTCAAATCCAAAGGGACTGTTTCTTTTGATTCACATTT
TCGAGTTCCATGGAGACTTGTGAGAAATATTCAGCCAAGCTTGGGTGACCCTTGTATTAAGATGAAATCTACTGCCATAAAGTGTGTGAAACCTACCTATCAATCCCTTT
TTGAGGACAATTCGATTATTACTGACTGGGAAGATCAAGAAGGGGATATTGAGGAGATGGACTCACCTTGGGAAGGAGCAATTATTTACAAGAGGAACTCTTCAGTTTCT
CATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCAACGATGGGTCTACGCGTAACTAAAGATGTGAA
AGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAAATAAAAAGTTGAGGTTGGATGGAATAGTTAAAACTGTCATCACTCTGAATTGTTATA
GCTGTTGTGAGCCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATGGGAATCATTAGCGGAAAG
GATATGTTCAAGACTGACAATGGAAATAGTGATGAAGATGATGAAGAGTTGATAGACTTGGATGATCAACTCTATTTTCCTCCTCTGAACAAAGAGATAGATATATCAAA
GAACATTAGAGACATCTTGCATCTAGAAATTACCATGAATGTGATATGTGATCCGGGATGCAAAGGTATTTGTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTA
AATGTAGTAAACAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAGATTTGAAAAGACGAATGCAGAACAATTCTTAA

mRNA sequence

Show/hide mRNA sequence

GGCTCCTCAACCAACTTAACTCGACTACAAAGTCCTTCCATGAGTTAAGGCACTGGATAAAATTTTTCCGGGGAGCGTCATCGAAATTCTCACCATTTTCAAGAACCTTA
GGATGGGATTCTTTTCGCTTTGACTTCATTAGCTGATTACATATAATTTGCAGGGACGGTGTTATTTGTATCTACGGAAATTAATTTCTATCCCCTATTCGTTTAAGATG
CTAGCCACATTCCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAATGTATTCTACTTCAAATCCAAAGGGACTGTTTCTTTTGATTCACATTTTCG
AGTTCCATGGAGACTTGTGAGAAATATTCAGCCAAGCTTGGGTGACCCTTGTATTAAGATGAAATCTACTGCCATAAAGTGTGTGAAACCTACCTATCAATCCCTTTTTG
AGGACAATTCGATTATTACTGACTGGGAAGATCAAGAAGGGGATATTGAGGAGATGGACTCACCTTGGGAAGGAGCAATTATTTACAAGAGGAACTCTTCAGTTTCTCAT
GTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCAACGATGGGTCTACGCGTAACTAAAGATGTGAAAGA
TTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAAATAAAAAGTTGAGGTTGGATGGAATAGTTAAAACTGTCATCACTCTGAATTGTTATAGCT
GTTGTGAGCCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATGGGAATCATTAGCGGAAAGGAT
ATGTTCAAGACTGACAATGGAAATAGTGATGAAGATGATGAAGAGTTGATAGACTTGGATGATCAACTCTATTTTCCTCCTCTGAACAAAGAGATAGATATATCAAAGAA
CATTAGAGACATCTTGCATCTAGAAATTACCATGAATGTGATATGTGATCCGGGATGCAAAGGTATTTGTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTAAAT
GTAGTAAACAGGCTGTAAAGAAGAATGATTTTGGTCCTCTTGGAGATTTGAAAAGACGAATGCAGAACAATTCTTAAAGACTTAGAATGCAAGACCATGTGTTCCTTTAA
A

Protein sequence

Show/hide protein sequence

MLATFPTSSVVSSSHSNEFINVFYFKSKGTVSFDSHFRVPWRLVRNIQPSLGDPCIKMKSTAIKCVKPTYQSLFEDNSIITDWEDQEGDIEEMDSPWEGAIIYKRNSSVS
HVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKNKKLRLDGIVKTVITLNCYSCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGK
DMFKTDNGNSDEDDEELIDLDDQLYFPPLNKEIDISKNIRDILHLEITMNVICDPGCKGICLNCGINLNTGSCKCSKQAVKKNDFGPLGDLKRRMQNNS

CsGy7G016060 (gene) of Cucumber (Gy14) v2.1 genome