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CsaV3_1G007720 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_1G007720
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr1:4901709..4902150
RNA-Seq ExpressionCsaV3_1G007720
SyntenyCsaV3_1G007720
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063492.1 30S ribosomal protein S12-B [Cucumis melo var. makuwa]5.4e-2893.33Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        MEEGRRFSNEEKDPMTSKEL EEPYEV+ISR VLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
KAE8652569.1 hypothetical protein Csa_014304 [Cucumis sativus]1.2e-32100Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTC
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTC
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTC
XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]3.2e-2894.67Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        MEEGRRFSNEEKDPMTSKELNEEPYEVKIS  VLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]6.0e-2792Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISR VLSSGSKGDLSVNFSTITPK  NSALRKVA+VRLTS FEI AY
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]4.9e-2994.67Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISR VLSSGSKGDLS+NFSTITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
TrEMBL top hitse value%identityAlignment
A0A0A0LR16 30S ribosomal protein S12-B4.8e-3096.05Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYT
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISR VLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAYT
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYT
A0A443Q5G0 30S ribosomal protein S12, chloroplastic3.0e-2486.67Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        +EEGRRFSNEEKDP+TSKELNEEPYEVKIS    +S SKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
A0A5A7V5H8 30S ribosomal protein S12-B2.6e-2893.33Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        MEEGRRFSNEEKDPMTSKEL EEPYEV+ISR VLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
A0A6A5N1Q8 Uncharacterized protein3.6e-2588Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        +EEG RFSNEEKDPMTSKELN+E YEVKIS  VL SGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
A0A6J1F0L1 uncharacterized protein LOC1114383941.5e-2894.67Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        MEEGRRFSNEEKDPMTSKELNEEPYEVKIS  VLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic3.0e-1395Show/hide
Query:  SGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        SGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  SGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
A4GYT5 30S ribosomal protein S12-A, chloroplastic1.6e-0692.86Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAY
        TITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAY
A4QJV5 30S ribosomal protein S12-A, chloroplastic1.6e-0692.86Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAY
        TITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAY
A4QJX7 30S ribosomal protein S12-B, chloroplastic1.9e-0775.68Show/hide
Query:  KGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        +G  +  +STITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  KGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
Q6RH26 Plastid 30S ribosomal protein S129.4e-0765.85Show/hide
Query:  SSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        +S  K  + +   TITPKKPNSALRKVA+VRLTS+ EITAY
Subjt:  SSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein4.5e-0444.44Show/hide
Query:  EEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        EE      +R +     K  +    ST TPKKPNSA RK+AKVRL++R +I A+
Subjt:  EEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
ATCG00065.1 ribosomal protein S12A1.1e-0792.86Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAY
        TITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAY
ATCG00905.1 ribosomal protein S12C1.1e-0792.86Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAY
        TITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAY
ATCG01230.1 ribosomal protein S12B1.1e-0792.86Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAY
        TITPKKPNSALRKVA+VRLTS FEITAY
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAY
ATMG00980.1 Ribosomal protein S12/S23 family protein4.5e-0444.44Show/hide
Query:  EEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY
        EE      +R +     K  +    ST TPKKPNSA RK+AKVRL++R +I A+
Subjt:  EEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAATGAGGAGCCGTATGAGGTGAAAATCTCACGTATGGTTCTGTCGAGTGG
CAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAAAGTACGCTTAACCTCAAGATTTGAAATCACTG
CTTATACGTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAATGAGGAGCCGTATGAGGTGAAAATCTCACGTATGGTTCTGTCGAGTGG
CAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAAAGTACGCTTAACCTCAAGATTTGAAATCACTG
CTTATACGTGTTGA
Protein sequenceShow/hide protein sequence
MEEGRRFSNEEKDPMTSKELNEEPYEVKISRMVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTC