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CsaV3_1G044200 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_1G044200
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrotransposon protein
Genome locationchr1:29444927..29445573
RNA-Seq ExpressionCsaV3_1G044200
SyntenyCsaV3_1G044200
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-1237.58Show/hide
Query:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH
        MRGPSCS FGWNEE+QCI+ E++LFDSWVK                DDL           A+    + V      +     PL D   E+I       VH
Subjt:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH

Query:  VEVK----------------GN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM
        +                   GN   KAI  W KE+RA ++E+  +VVKQLQDIPEL+++ R KLM
Subjt:  VEVK----------------GN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM

KAA0063430.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.5e-0857.53Show/hide
Query:  VDQVKEEIVHVEVKGN-----------------KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM
        V QV+E+IV VEV+G                  KAI  WPKE+RAT+VELCVEVVKQLQDIPELQ++ R KLM
Subjt:  VDQVKEEIVHVEVKGN-----------------KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM

KGN66636.1 hypothetical protein Csa_007482 [Cucumis sativus]9.1e-62100Show/hide
Query:  MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELC
        MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELC
Subjt:  MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELC

Query:  VEVVKQLQDIPELQNRVRVKLM
        VEVVKQLQDIPELQNRVRVKLM
Subjt:  VEVVKQLQDIPELQNRVRVKLM

TYK19779.1 retrotransposon protein [Cucumis melo var. makuwa]5.8e-0837.7Show/hide
Query:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVF----PLVDQVKEEIVHVEVK
        +RGPSCS FGWNE++QCI+ E++LFD+WVK                DDL     +  ++ A  + L       + ++ +F    PL D   ++I  +  +
Subjt:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVF----PLVDQVKEEIVHVEVK

Query:  GNKAIVVWPKEERATKVELCVE
        G  AI  WPKE+RAT+VEL VE
Subjt:  GNKAIVVWPKEERATKVELCVE

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.1e-0934.21Show/hide
Query:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH
        MRGPSCS FGWNEE+QCI+ E++LFDSW+K                DDL           A+      V      +     PL D   E+I       VH
Subjt:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH

Query:  -----------------------------------VEV------KGN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM
                                           VEV       GN   KAI  WPKE+RA +VE+  +VVKQLQDIP+L+++ R KLM
Subjt:  -----------------------------------VEV------KGN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM

TrEMBL top hitse value%identityAlignment
A0A0A0M343 Uncharacterized protein4.4e-62100Show/hide
Query:  MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELC
        MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELC
Subjt:  MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELC

Query:  VEVVKQLQDIPELQNRVRVKLM
        VEVVKQLQDIPELQNRVRVKLM
Subjt:  VEVVKQLQDIPELQNRVRVKLM

A0A1S3B4L3 uncharacterized protein LOC1034859535.1e-1034.21Show/hide
Query:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH
        MRGPSCS FGWNEE+QCI+ E++LFDSW+K                DDL           A+      V      +     PL D   E+I       VH
Subjt:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH

Query:  -----------------------------------VEV------KGN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM
                                           VEV       GN   KAI  WPKE+RA +VE+  +VVKQLQDIP+L+++ R KLM
Subjt:  -----------------------------------VEV------KGN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM

A0A5A7U0H7 Retrotransposon protein5.1e-1034.21Show/hide
Query:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH
        MRGPSCS FGWNEE+QCI+ E++LFDSW+K                DDL           A+      V      +     PL D   E+I       VH
Subjt:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH

Query:  -----------------------------------VEV------KGN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM
                                           VEV       GN   KAI  WPKE+RA +VE+  +VVKQLQDIP+L+++ R KLM
Subjt:  -----------------------------------VEV------KGN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM

A0A5A7V8C5 Putative nuclease HARBI17.4e-0957.53Show/hide
Query:  VDQVKEEIVHVEVKGN-----------------KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM
        V QV+E+IV VEV+G                  KAI  WPKE+RAT+VELCVEVVKQLQDIPELQ++ R KLM
Subjt:  VDQVKEEIVHVEVKGN-----------------KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM

A0A5D3DG22 Retrotransposon protein4.9e-1337.58Show/hide
Query:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH
        MRGPSCS FGWNEE+QCI+ E++LFDSWVK                DDL           A+    + V      +     PL D   E+I       VH
Subjt:  MRGPSCSKFGWNEEYQCILTEQELFDSWVK----------------DDLMSSIKIGIQEHAQRSLLMWV-KMCQTILMTVFPLVDQVKEEI-------VH

Query:  VEVK----------------GN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM
        +                   GN   KAI  W KE+RA ++E+  +VVKQLQDIPEL+++ R KLM
Subjt:  VEVK----------------GN---KAIVVWPKEERATKVELCVEVVKQLQDIPELQNRVRVKLM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGGCCATCGTGTAGTAAGTTTGGATGGAATGAAGAATATCAATGCATTCTCACAGAACAAGAGTTGTTTGACAGTTGGGTCAAGGATGATCTTATGTCT
TCGATAAAGATTGGGATACAGGAGCACGCTCAGAGATCTTTGTTGATGTGGGTTAAAATGTGCCAAACAATTTTAATGACGGTGTTCCCCTTGGTCGATCAAGTG
AAGGAAGAAATTGTTCACGTGGAAGTAAAAGGAAACAAGGCAATTGTAGTTTGGCCAAAAGAAGAGCGTGCAACAAAGGTTGAATTGTGTGTTGAAGTCGTGAAA
CAACTGCAAGATATCCCTGAACTACAGAACCGGGTGAGGGTAAAGCTTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGGCCATCGTGTAGTAAGTTTGGATGGAATGAAGAATATCAATGCATTCTCACAGAACAAGAGTTGTTTGACAGTTGGGTCAAGGATGATCTTATGTCT
TCGATAAAGATTGGGATACAGGAGCACGCTCAGAGATCTTTGTTGATGTGGGTTAAAATGTGCCAAACAATTTTAATGACGGTGTTCCCCTTGGTCGATCAAGTG
AAGGAAGAAATTGTTCACGTGGAAGTAAAAGGAAACAAGGCAATTGTAGTTTGGCCAAAAGAAGAGCGTGCAACAAAGGTTGAATTGTGTGTTGAAGTCGTGAAA
CAACTGCAAGATATCCCTGAACTACAGAACCGGGTGAGGGTAAAGCTTATGTAA
Protein sequenceShow/hide protein sequence
MRGPSCSKFGWNEEYQCILTEQELFDSWVKDDLMSSIKIGIQEHAQRSLLMWVKMCQTILMTVFPLVDQVKEEIVHVEVKGNKAIVVWPKEERATKVELCVEVVK
QLQDIPELQNRVRVKLM