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CsaV3_1G044340 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_1G044340
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionChorein_N domain-containing protein
Genome locationchr1:29666999..29682621
RNA-Seq ExpressionCsaV3_1G044340
SyntenyCsaV3_1G044340
Gene Ontology termsNA
InterPro domainsIPR026854 - Vacuolar protein sorting-associated protein 13-like, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038223.1 putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo var. makuwa]5.0e-63100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQIL
        LDMTGDLGHIKLGLKFSSLKIMKQIL
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQIL

KGN66651.1 hypothetical protein Csa_007236 [Cucumis sativus]2.7e-64100Show/hide
Query:  MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV
        MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV
Subjt:  MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV

Query:  MFLDMTGDLGHIKLGLKFSSLKIMKQIL
        MFLDMTGDLGHIKLGLKFSSLKIMKQIL
Subjt:  MFLDMTGDLGHIKLGLKFSSLKIMKQIL

XP_008443663.1 PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo]5.0e-63100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQIL
        LDMTGDLGHIKLGLKFSSLKIMKQIL
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQIL

XP_011660209.1 uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]5.0e-63100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQIL
        LDMTGDLGHIKLGLKFSSLKIMKQIL
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQIL

XP_031736164.1 uncharacterized protein LOC101204937 isoform X3 [Cucumis sativus]5.0e-63100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQIL
        LDMTGDLGHIKLGLKFSSLKIMKQIL
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQIL

TrEMBL top hitse value%identityAlignment
A0A0A0M352 Chorein_N domain-containing protein1.3e-64100Show/hide
Query:  MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV
        MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV
Subjt:  MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHV

Query:  MFLDMTGDLGHIKLGLKFSSLKIMKQIL
        MFLDMTGDLGHIKLGLKFSSLKIMKQIL
Subjt:  MFLDMTGDLGHIKLGLKFSSLKIMKQIL

A0A1S3B8J3 putative vacuolar protein sorting-associated protein 13A isoform X12.4e-63100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQIL
        LDMTGDLGHIKLGLKFSSLKIMKQIL
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQIL

A0A5A7T5L4 Putative vacuolar protein sorting-associated protein 13A isoform X12.4e-63100Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQIL
        LDMTGDLGHIKLGLKFSSLKIMKQIL
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQIL

A0A6J1D861 uncharacterized protein LOC111018256 isoform X12.5e-6096.03Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EWSSDAVE+REFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQIL
        LDM GDLG+IKLGLKFSSL+IMKQIL
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQIL

A0A6J1D8L0 uncharacterized protein LOC111018256 isoform X22.5e-6096.03Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDD EWSSDAVE+REFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQIL
        LDM GDLG+IKLGLKFSSL+IMKQIL
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQIL

SwissProt top hitse value%identityAlignment
A1Z713 Vacuolar protein sorting-associated protein 132.5e-1230.65Show/hide
Query:  MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDN-HAGQSFISYITAKILDNIQISIRNFH
        ++G +G+L +KIPWK L   P+I+ +ED+Y+  S  ++ +++++   K E   KKA + A E A+      D   A   F   +TA+I++N+Q+ I N H
Subjt:  MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDN-HAGQSFISYITAKILDNIQISIRNFH

Query:  VMFLDMTGDLGHIKLGLKFSSLKI
        + + D T        G+    L++
Subjt:  VMFLDMTGDLGHIKLGLKFSSLKI

P87319 Vacuolar protein sorting-associated protein 13a1.5e-0933.08Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAE-LAKLSRRVCDNHAG-------QSFISYITAKILDNIQIS
        G +G  +++IPW  L    + I +EDIY+S   +     + D +E+ + A K+ ++ + E L K  R   +  +        QSFI Y+ AK+ DNIQI 
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAE-LAKLSRRVCDNHAG-------QSFISYITAKILDNIQIS

Query:  IRNFHVMFLDMTGDLGH-IKLGLKFSSLKI
        I   H+ F D   DL     LGL   SL++
Subjt:  IRNFHVMFLDMTGDLGH-IKLGLKFSSLKI

Q07878 Vacuolar protein sorting-associated protein 133.0e-1031.34Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVC-------------DNHAGQSFISYITAKILD
        G +G L + +PW  L   P+ II+ED Y+  S R +   + + + KR F  K  K++  EL   +R +               N+AG  F+  +T KI+D
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVC-------------DNHAGQSFISYITAKILD

Query:  NIQISIRNFHVMFLDMTG--DLGHIKLGLKFSSL
        N+Q++I+N H+ + DM G    G   +GL  + L
Subjt:  NIQISIRNFHVMFLDMTG--DLGHIKLGLKFSSL

Q54LB8 Putative vacuolar protein sorting-associated protein 13A5.3e-0729.23Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIY-ISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDN-------HAGQSFISYITAKILDNIQIS
        G +G+L +K+PWK L   P+II ++ IY ++  Q  + ++      K++   KK K+   E  K  +   +N           SF   +  KI+DN+QI 
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIY-ISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDN-------HAGQSFISYITAKILDNIQIS

Query:  IRNFHVMFLDMTGDLGHI-KLGLKFSSLKI
        I   H+ F +   D+G +  LG+    L I
Subjt:  IRNFHVMFLDMTGDLGHI-KLGLKFSSLKI

Q555C6 Putative vacuolar protein sorting-associated protein 13B4.1e-0728Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQ------SFISYITAKILDNIQISIR
        G +G L++KIPW  L   P+I  ++ I + A  +   +++ +  +K +   K+ K+   EL +  +    + A Q      +F++ +  KIL+NIQ+ I+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQ------SFISYITAKILDNIQISIR

Query:  NFHVMFLDMTGDLGHIKLGLKFSSL
        +FH+ + ++ G   +  LG+ F SL
Subjt:  NFHVMFLDMTGDLGHIKLGLKFSSL

Arabidopsis top hitse value%identityAlignment
AT1G48090.1 calcium-dependent lipid-binding family protein1.6e-1130.09Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDN----HAGQSFISYITAKILDNIQISIRNF
        G VG +++K+PWK LG +P+I++++ +++ A    D     +   ++    K  +I  AE A L  R          G S++  I A I+ N+++SI N 
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDN----HAGQSFISYITAKILDNIQISIRNF

Query:  HVMFLDMTGDLGH
        H+ + D T + GH
Subjt:  HVMFLDMTGDLGH

AT4G17140.1 pleckstrin homology (PH) domain-containing protein2.9e-0827.03Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE-WSSDAVEKREFAGKKAKIAAAELAKLSR-RVCDNHAGQSFISYITAKILDNIQISIRNFHV
        G +G + +K+PW +LG +P+++ L+ I++ A    D E  S D++++     K+  I   E   + R R       +S++  +   I+ N+++SI N H+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE-WSSDAVEKREFAGKKAKIAAAELAKLSR-RVCDNHAGQSFISYITAKILDNIQISIRNFHV

Query:  MFLDMTGDLGH
         + D+  + GH
Subjt:  MFLDMTGDLGH

AT4G17140.2 pleckstrin homology (PH) domain-containing protein2.9e-0827.03Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE-WSSDAVEKREFAGKKAKIAAAELAKLSR-RVCDNHAGQSFISYITAKILDNIQISIRNFHV
        G +G + +K+PW +LG +P+++ L+ I++ A    D E  S D++++     K+  I   E   + R R       +S++  +   I+ N+++SI N H+
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGE-WSSDAVEKREFAGKKAKIAAAELAKLSR-RVCDNHAGQSFISYITAKILDNIQISIRNFHV

Query:  MFLDMTGDLGH
         + D+  + GH
Subjt:  MFLDMTGDLGH

AT5G24740.1 Protein of unknown function (DUF1162)3.3e-4466.94Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVG+LSIKIPWKKL  DP+ I++ED++I ASQR+D EWSSD VEKREFAGKKAK+A+AELAKLSRRV DN  G S++SYITAKILD++Q+SI+NFH+++
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQ
         D   + G + LGL+FSSL + KQ
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQ

AT5G24740.2 Protein of unknown function (DUF1162)3.3e-4466.94Show/hide
Query:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF
        GRVG+LSIKIPWKKL  DP+ I++ED++I ASQR+D EWSSD VEKREFAGKKAK+A+AELAKLSRRV DN  G S++SYITAKILD++Q+SI+NFH+++
Subjt:  GRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMF

Query:  LDMTGDLGHIKLGLKFSSLKIMKQ
         D   + G + LGL+FSSL + KQ
Subjt:  LDMTGDLGHIKLGLKFSSLKIMKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCGATCATCATTATTTTAGAGGATATATATATTTCTGCATCTCAG
CGAGATGATGGGGAGTGGAGCTCAGATGCAGTTGAAAAAAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCTGCAGAGCTGGCCAAGTTATCGAGGCGTGTA
TGTGATAATCATGCTGGACAATCATTTATCTCTTACATCACAGCAAAGATTCTTGACAACATCCAAATATCCATTAGAAATTTTCACGTCATGTTCCTTGATATG
ACTGGCGACCTGGGACATATAAAGCTAGGTCTGAAGTTTTCCAGCCTGAAGATAATGAAACAAATTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGTCGTGTAGGGAGGTTAAGCATCAAGATTCCATGGAAAAAGCTTGGATGGGATCCGATCATCATTATTTTAGAGGATATATATATTTCTGCATCTCAG
CGAGATGATGGGGAGTGGAGCTCAGATGCAGTTGAAAAAAGAGAATTTGCTGGGAAGAAGGCCAAAATTGCTGCTGCAGAGCTGGCCAAGTTATCGAGGCGTGTA
TGTGATAATCATGCTGGACAATCATTTATCTCTTACATCACAGCAAAGATTCTTGACAACATCCAAATATCCATTAGAAATTTTCACGTCATGTTCCTTGATATG
ACTGGCGACCTGGGACATATAAAGCTAGGTCTGAAGTTTTCCAGCCTGAAGATAATGAAACAAATTCTGTAA
Protein sequenceShow/hide protein sequence
MFGRVGRLSIKIPWKKLGWDPIIIILEDIYISASQRDDGEWSSDAVEKREFAGKKAKIAAAELAKLSRRVCDNHAGQSFISYITAKILDNIQISIRNFHVMFLDM
TGDLGHIKLGLKFSSLKIMKQIL