CuGenDBv2

Gene ID	CsaV3_2G007740
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	nuclear pore complex protein NUP43
Genome location	chr2:4014610..4021507
RNA-Seq Expression	CsaV3_2G007740
Synteny	CsaV3_2G007740
Gene Ontology terms	GO:0031080 - nuclear pore outer ring (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR036322 - WD40-repeat-containing domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6586038.1 Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-190

91.14

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAI SPQQQPQIHRFPQFKYVDGVRWLPPLSAF RFAV+ALFDSDSDSSSIEIHSLTQNPLD+ P S W SPSR+SSLKTSQ ++NPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPM+ASLDSELSVPEK+LHD PISCVDVMDGGGECLTV+EDGRV+LVSVGESGL+YRRIFDSNGLVSY A KWASPTEF TGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAVSQFK +WASGIVHCIDIHPSRKHTCLAGGSFGT FAWDLR QQQPIILSGLEGSKTSN SPCESEVWEVHYDPYIKSGN+GGMSS+QILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
        GI+TSIEQGK+PVELLAEPCAINGFDI+RQHPSEVICNLEWESVAILSRP
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP

XP_004144716.1 nuclear pore complex protein NUP43 [Cucumis sativus]

6.5e-206

100

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
        GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP

XP_008452472.1 PREDICTED: nuclear pore complex protein NUP43 [Cucumis melo]

2.0e-199

96.56

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAI SPQQQPQIHRFPQFKYVDGVRWLPPLSAF+RFAVIALFDSD DSSSIEIHSLTQNPLDI PHSTW+SPSRVSSLKTSQLH+NPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPMEASLDSELSVPEKMLHDGPISCVDVMD GGECLTVSEDGRV+LVSVGESGL+YRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAVSQFKA+WASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEG+KTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSR
        GILTSIEQGKEPVELLAEPCAINGFDI+RQHPSEVICNLEWESVAILSR
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSR

XP_022937892.1 nuclear pore complex protein NUP43 [Cucurbita moschata]

1.3e-190

91.43

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAI SPQQQPQIHRFPQFKYVDGVRWLPPLSAF RFAV+ALFDSDSDSSSIEIHSLTQNPLD+ P S W SPSR+SSLKTSQ ++NPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPM+ASLDSELSVPEK+LHD PISCVDVMDGGGECLTV+EDGRV+LVSVGESGL+YRRIFDSNGLVSY A KWASPTEF TGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAVSQFK +WASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEGSKTSN SPCESEVWEVHYDPYIKSGN+GGMSS+QILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
        GI+TSIEQGK+PVELLAEPCAINGFDI+RQHPSEVICNLEWESVAILSRP
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP

XP_038889924.1 nuclear pore complex protein NUP43 [Benincasa hispida]

2.9e-190

92.55

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAI SPQQQPQIHRFPQFKYVDGVRWL  LS FSR AVIALFDSDSDSSSIEIHSLTQ PLDI PHSTW SPSRVSSLKTSQL++NPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPMEA+LDSELSVPEKMLHD PISCVDVMDGGGECLTVSEDGRV+LVS+GESGL+Y RIFDSNGLVSY AVKWASPTEF TGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAVSQFKA+WASGIVH IDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSS+QILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSR
        GILTSIEQGK+PV+LLAEPCAINGFDI+R HPSEVICNLEWES+AILSR
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJ46 Uncharacterized protein

3.2e-206

100

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
        GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP

A0A1S3BTA6 nuclear pore complex protein NUP43

9.9e-200

96.56

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAI SPQQQPQIHRFPQFKYVDGVRWLPPLSAF+RFAVIALFDSD DSSSIEIHSLTQNPLDI PHSTW+SPSRVSSLKTSQLH+NPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPMEASLDSELSVPEKMLHDGPISCVDVMD GGECLTVSEDGRV+LVSVGESGL+YRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAVSQFKA+WASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEG+KTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSR
        GILTSIEQGKEPVELLAEPCAINGFDI+RQHPSEVICNLEWESVAILSR
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSR

A0A5D3BAS9 Nuclear pore complex protein NUP43

9.9e-200

96.56

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAI SPQQQPQIHRFPQFKYVDGVRWLPPLSAF+RFAVIALFDSD DSSSIEIHSLTQNPLDI PHSTW+SPSRVSSLKTSQLH+NPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPMEASLDSELSVPEKMLHDGPISCVDVMD GGECLTVSEDGRV+LVSVGESGL+YRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAVSQFKA+WASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEG+KTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSR
        GILTSIEQGKEPVELLAEPCAINGFDI+RQHPSEVICNLEWESVAILSR
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSR

A0A6J1FCG9 nuclear pore complex protein NUP43

6.4e-191

91.43

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAI SPQQQPQIHRFPQFKYVDGVRWLPPLSAF RFAV+ALFDSDSDSSSIEIHSLTQNPLD+ P S W SPSR+SSLKTSQ ++NPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPM+ASLDSELSVPEK+LHD PISCVDVMDGGGECLTV+EDGRV+LVSVGESGL+YRRIFDSNGLVSY A KWASPTEF TGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAVSQFK +WASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEGSKTSN SPCESEVWEVHYDPYIKSGN+GGMSS+QILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
        GI+TSIEQGK+PVELLAEPCAINGFDI+RQHPSEVICNLEWESVAILSRP
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP

A0A6J1HYH3 nuclear pore complex protein NUP43

6.6e-188

89.71

Show/hide

Query:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV
        MAI SPQQQPQIHRFPQFKY+DGVRWLPPLSAF RFAV+ALFDSDSDSSSIEIHSLTQNPLD+ P S W SPSR+SSLKTSQ ++NPLVFASTYTGSLHV
Subjt:  MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHV

Query:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG
        LSVEPM+ASLDSELSVPEK+LHD PISCVDVMD GGECLTV+EDGRV+LVSVGESGL+YRRIFDSNGLVSY A KWASPTEF TGGCGFSLQWWDQRKPG
Subjt:  LSVEPMEASLDSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPG

Query:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED
        GAV QFK +WASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEGSKTSN SPCESEVWEV YDPYIKSGN+GGMSS+QILPAMICSED
Subjt:  GAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED

Query:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
        GI+TSIEQGK+PVELLAEPCAINGFDI+ QHPSEVICNLEWESVAILSRP
Subjt:  GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP

SwissProt top hits

e value

%identity

Alignment

Q24JJ9 Nuclear pore complex protein NUP43

1.4e-110

58.84

Show/hide

Query:  QQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLD-------IVPHSTWISPSRVSSLKTSQL-----HRNPLVFASTY
        Q   Q+HR PQ KYVDGVRWLP  SA +RF   A +D+D DSSSIEI SL  NP         I   S+W SPSRVSSL+ +          P+V A+T 
Subjt:  QQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLD-------IVPHSTWISPSRVSSLKTSQL-----HRNPLVFASTY

Query:  TGSLHVLSVEPMEASLDSELSVPE-KMLHDGPISCVDVMDGGGECLTVSEDGRVSLVS-VGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQ
        +GSLHVL ++ +E +   E    E +  H G +  VD  + GGEC+TV EDGRV++V  V   GL YR++FD NGLV+Y AVKWASPTEFVTGG GF LQ
Subjt:  TGSLHVLSVEPMEASLDSELSVPE-KMLHDGPISCVDVMDGGGECLTVSEDGRVSLVS-VGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQ

Query:  WWDQRKPGGAVSQFKANW----ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSS
         WDQRK G AVSQ K NW     S IVH IDIHPSRKHTC+AGGS GTVFAWDLR  QQPI+LSG+  S+  N    ESEVWEV YD Y KS     +SS
Subjt:  WWDQRKPGGAVSQFKANW----ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSS

Query:  TQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
        ++ILP M CSEDGIL  IEQG+EP+ELLAEPCAIN FDI+RQ+P +VIC+LEWES+A+ SRP
Subjt:  TQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP

Arabidopsis top hits

e value

%identity

Alignment

AT4G30840.1 Transducin/WD40 repeat-like superfamily protein

1.0e-111

58.84

Show/hide

Query:  QQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLD-------IVPHSTWISPSRVSSLKTSQL-----HRNPLVFASTY
        Q   Q+HR PQ KYVDGVRWLP  SA +RF   A +D+D DSSSIEI SL  NP         I   S+W SPSRVSSL+ +          P+V A+T 
Subjt:  QQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLD-------IVPHSTWISPSRVSSLKTSQL-----HRNPLVFASTY

Query:  TGSLHVLSVEPMEASLDSELSVPE-KMLHDGPISCVDVMDGGGECLTVSEDGRVSLVS-VGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQ
        +GSLHVL ++ +E +   E    E +  H G +  VD  + GGEC+TV EDGRV++V  V   GL YR++FD NGLV+Y AVKWASPTEFVTGG GF LQ
Subjt:  TGSLHVLSVEPMEASLDSELSVPE-KMLHDGPISCVDVMDGGGECLTVSEDGRVSLVS-VGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQ

Query:  WWDQRKPGGAVSQFKANW----ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSS
         WDQRK G AVSQ K NW     S IVH IDIHPSRKHTC+AGGS GTVFAWDLR  QQPI+LSG+  S+  N    ESEVWEV YD Y KS     +SS
Subjt:  WWDQRKPGGAVSQFKANW----ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSS

Query:  TQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP
        ++ILP M CSEDGIL  IEQG+EP+ELLAEPCAIN FDI+RQ+P +VIC+LEWES+A+ SRP
Subjt:  TQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP

Sequences

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CDS sequence

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ATGGCGATCGCTAGTCCCCAACAGCAACCGCAAATCCACAGGTTCCCGCAATTCAAGTATGTTGATGGTGTTCGTTGGCTTCCACCACTCTCCGCATTTAGCCGGTTTGC
CGTCATTGCCCTTTTCGACTCTGATTCCGACTCATCCTCCATTGAAATTCACTCCTTGACTCAAAATCCACTGGATATAGTCCCTCATTCGACATGGATTTCACCTTCAA
GAGTATCTTCACTTAAAACATCTCAACTCCACCGAAACCCTCTTGTTTTCGCTTCGACTTACACAGGTTCTCTTCATGTTTTATCTGTCGAGCCAATGGAAGCGTCGCTT
GACTCGGAGCTTTCGGTACCGGAGAAGATGTTGCACGACGGACCTATTTCATGTGTCGATGTGATGGATGGGGGAGGTGAATGTCTGACTGTTTCGGAAGATGGACGGGT
GAGTTTGGTGAGCGTTGGGGAATCTGGATTGAGTTATCGTCGGATATTTGATAGTAATGGGTTGGTGTCGTATAACGCTGTGAAATGGGCATCGCCTACCGAGTTTGTGA
CTGGTGGTTGTGGGTTTAGCTTGCAATGGTGGGATCAGAGGAAGCCCGGTGGAGCTGTTTCTCAGTTTAAGGCCAATTGGGCGTCTGGTATAGTTCACTGCATTGATATC
CATCCATCGCGAAAGCATACTTGTTTGGCAGGGGGCTCTTTTGGGACTGTCTTTGCCTGGGATTTGAGGTCACAACAGCAGCCTATCATTCTTTCGGGTCTAGAAGGGAG
CAAAACATCAAATCCTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAATCTAGGTGGCATGTCATCTACACAGATTTTACCTG
CTATGATCTGCTCTGAGGACGGGATTCTAACTAGTATTGAGCAAGGCAAGGAGCCTGTGGAACTGCTGGCAGAACCATGTGCAATTAATGGTTTCGACATTAACCGTCAA
CATCCATCAGAAGTGATATGTAACTTGGAGTGGGAATCCGTTGCCATCCTGTCAAGACCTTGA

mRNA sequence

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Protein sequence

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MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNPLDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHVLSVEPMEASL
DSELSVPEKMLHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPTEFVTGGCGFSLQWWDQRKPGGAVSQFKANWASGIVHCIDI
HPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQ
HPSEVICNLEWESVAILSRP

CsaV3_2G007740 (gene) of Cucumber (Chinese Long) v3 genome