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CsaV3_2G012000 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_2G012000
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionS-protein homolog
Genome locationchr2:9402255..9402622
RNA-Seq ExpressionCsaV3_2G012000
SyntenyCsaV3_2G012000
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651787.1 hypothetical protein Csa_006214, partial [Cucumis sativus]2.2e-68100Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLVTEDGFYFSSDEINWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

XP_004139019.1 S-protein homolog 5 [Cucumis sativus]2.2e-68100Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLVTEDGFYFSSDEINWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

XP_016902587.1 PREDICTED: uncharacterized protein LOC103499490 [Cucumis melo]2.3e-6594.26Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        +FI+QPDRLYLHGV+FEVRVINGFKNNSSLPLVIWCSSKE+DLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKR+SFDAFKVPRDFYRCG+FKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLVTEDGFYFS DEINWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

XP_038875976.1 S-protein homolog 5-like isoform X1 [Benincasa hispida]4.3e-6493.44Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        MFII PDR YLH VVFEVRVINGF+NNSSLPLVIWCSSKE+DLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCG+FKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLVTEDGFYFS DE+NWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

XP_038875977.1 S-protein homolog 5-like isoform X2 [Benincasa hispida]4.3e-6493.44Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        MFII PDR YLH VVFEVRVINGF+NNSSLPLVIWCSSKE+DLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCG+FKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLVTEDGFYFS DE+NWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

TrEMBL top hitse value%identityAlignment
A0A0A0LNI8 S-protein homolog1.1e-68100Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLVTEDGFYFSSDEINWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

A0A1S4E2Y6 S-protein homolog1.1e-6594.26Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        +FI+QPDRLYLHGV+FEVRVINGFKNNSSLPLVIWCSSKE+DLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKR+SFDAFKVPRDFYRCG+FKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLVTEDGFYFS DEINWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

A0A5D3CZS1 S-protein homolog1.1e-6594.26Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        +FI+QPDRLYLHGV+FEVRVINGFKNNSSLPLVIWCSSKE+DLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKR+SFDAFKVPRDFYRCG+FKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLVTEDGFYFS DEINWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

A0A6J1HNC1 S-protein homolog2.2e-6188.52Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        +FIIQPDRLYLHGVV+EVRVINGF NNSSLPLVIWCSSK++DLGGRALQEHDDFSW+VTTKLW +NQF CTMKWDAKR+SFDAFKVPRDFYRCG FKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLV EDGFYFS DE+NWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

A0A6J1KN10 S-protein homolog2.2e-6188.52Show/hide
Query:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS
        +FIIQPDRLYLHGVV+EVRVINGF NNSSLPLVIWCSSK++DLGGRALQEHDDFSW+VTTKLW +NQF CTMKWDAKR+SFDAFKVPRDFYRCG FKKCS
Subjt:  MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCS

Query:  WLVTEDGFYFSSDEINWKKDFQ
        WLV EDGFYFS DE+NWKKDFQ
Subjt:  WLVTEDGFYFSSDEINWKKDFQ

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 28.1e-0528.89Show/hide
Query:  SSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDF---YRCGHFKKCSWLVTEDGFYFSSDE
        + L L+  C SK++DLG R LQ  + +S+    + +    + C+  W  +  SFD +K  RD     +C    +C W +  +G    +DE
Subjt:  SSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDF---YRCGHFKKCSWLVTEDGFYFSSDE

Arabidopsis top hitse value%identityAlignment
AT1G26798.1 Plant self-incompatibility protein S1 family7.3e-0931.65Show/hide
Query:  LVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRD---FYRCGHFKKCSWLVTEDG
        LV+ C +K  DLG  AL+  +   ++    L ++  ++CT  W    ++FD F+V RD      CG  ++C W + E G
Subjt:  LVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRD---FYRCGHFKKCSWLVTEDG

AT3G24060.1 Plant self-incompatibility protein S1 family3.2e-4162.5Show/hide
Query:  IIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWK-SNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCSW
        ++QP  ++L G  F+VRVIN F++NSSLPLVIWC+S + DLGGRALQE DDF W     LW    +++CTMKWD+KR+ F+AFKV RD  RCG  KKCSW
Subjt:  IIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWK-SNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCSW

Query:  LVTEDGFYFSSDEINWKKDF
         V EDGFYFSSDE+ W KDF
Subjt:  LVTEDGFYFSSDEINWKKDF

AT4G16195.1 Plant self-incompatibility protein S1 family5.8e-0628.89Show/hide
Query:  SSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDF---YRCGHFKKCSWLVTEDGFYFSSDE
        + L L+  C SK++DLG R LQ  + +S+    + +    + C+  W  +  SFD +K  RD     +C    +C W +  +G    +DE
Subjt:  SSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDF---YRCGHFKKCSWLVTEDGFYFSSDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATCATACAACCAGATAGGTTATACCTACACGGGGTCGTTTTCGAGGTTCGTGTCATCAACGGCTTCAAAAACAACTCATCTTTGCCTTTAGTGATATGGTGCTC
CTCAAAAGAGAATGATTTAGGAGGAAGGGCTTTGCAAGAACATGATGATTTCAGCTGGAAAGTAACAACAAAACTTTGGAAGAGCAACCAATTCTCTTGTACCATGAAAT
GGGATGCCAAAAGGAGATCCTTTGATGCGTTTAAGGTTCCTAGGGATTTTTATCGATGTGGGCATTTCAAGAAATGTTCTTGGTTGGTTACTGAAGATGGCTTCTATTTT
AGCTCTGATGAGATTAACTGGAAGAAAGATTTTCAATG
mRNA sequenceShow/hide mRNA sequence
ATGTTCATCATACAACCAGATAGGTTATACCTACACGGGGTCGTTTTCGAGGTTCGTGTCATCAACGGCTTCAAAAACAACTCATCTTTGCCTTTAGTGATATGGTGCTC
CTCAAAAGAGAATGATTTAGGAGGAAGGGCTTTGCAAGAACATGATGATTTCAGCTGGAAAGTAACAACAAAACTTTGGAAGAGCAACCAATTCTCTTGTACCATGAAAT
GGGATGCCAAAAGGAGATCCTTTGATGCGTTTAAGGTTCCTAGGGATTTTTATCGATGTGGGCATTTCAAGAAATGTTCTTGGTTGGTTACTGAAGATGGCTTCTATTTT
AGCTCTGATGAGATTAACTGGAAGAAAGATTTTCAATG
Protein sequenceShow/hide protein sequence
MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTTKLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCSWLVTEDGFYF
SSDEINWKKDFQX