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CsaV3_3G018400 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_3G018400
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr3:14122363..14123000
RNA-Seq ExpressionCsaV3_3G018400
SyntenyCsaV3_3G018400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035974.1 hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa]6.9e-0748.75Show/hide
Query:  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFGC
        RF +GLR +IRT V   VVR DYA+LVD TL +EK++  K  S  +SGE EK S+E  +K  K   S+ S WS D +  C
Subjt:  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFGC

KAA0062421.1 hypothetical protein E6C27_scaffold154G002300 [Cucumis melo var. makuwa]7.6e-0648.75Show/hide
Query:  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFGC
        +F  GLR +IRT V  IV+R DYA LVD  L +EK+L  KRPS  +S E E  SVE  +K +K   S+GS W+ D +  C
Subjt:  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFGC

KGN57517.1 hypothetical protein Csa_010516 [Cucumis sativus]1.7e-66100Show/hide
Query:  MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFS
        MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFS
Subjt:  MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFS

Query:  KMSKPTFSRGSDWSGDTRFGCIRMQQKTFWGL
        KMSKPTFSRGSDWSGDTRFGCIRMQQKTFWGL
Subjt:  KMSKPTFSRGSDWSGDTRFGCIRMQQKTFWGL

TrEMBL top hitse value%identityAlignment
A0A0A0LA91 Uncharacterized protein8.4e-67100Show/hide
Query:  MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFS
        MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFS
Subjt:  MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFS

Query:  KMSKPTFSRGSDWSGDTRFGCIRMQQKTFWGL
        KMSKPTFSRGSDWSGDTRFGCIRMQQKTFWGL
Subjt:  KMSKPTFSRGSDWSGDTRFGCIRMQQKTFWGL

A0A5D3DS44 Uncharacterized protein3.7e-0648.75Show/hide
Query:  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFGC
        +F  GLR +IRT V  IV+R DYA LVD  L +EK+L  KRPS  +S E E  SVE  +K +K   S+GS W+ D +  C
Subjt:  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFGC

A0A5D3E3Q3 Retrotrans_gag domain-containing protein3.3e-0748.75Show/hide
Query:  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFGC
        RF +GLR +IRT V   VVR DYA+LVD TL +EK++  K  S  +SGE EK S+E  +K  K   S+ S WS D +  C
Subjt:  RFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRGSDWSGDTRFGC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCACCCTTGCACTTTTGTCTGAGAACCCTATTTCTTACACTTTTGTCATTCACCTCGGTCGAGCAAGCATCGAGTTAGCCTCGGGATCCTTCAAATTCCTTCTGTA
CCTTCAATCTACGAGGTTCGAGAATGGTTTAAGATCAGAAATTAGAACCCTTGTCAAAACCATCGTAGTAAGATATGATTATGCAGAATTGGTGGACGAGACTCTACACA
TTGAAAAGAATTTAAAAGGAAAACGACCAAGTTTGGTGGTAAGTGGAGAAGGAGAAAAAGAAAGTGTTGAAGATTTTAGTAAAATGTCTAAGCCTACATTTAGTCGAGGA
TCAGATTGGAGTGGCGATACAAGGTTTGGGTGTATCCGAATGCAACAAAAGACATTTTGGGGCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCACCCTTGCACTTTTGTCTGAGAACCCTATTTCTTACACTTTTGTCATTCACCTCGGTCGAGCAAGCATCGAGTTAGCCTCGGGATCCTTCAAATTCCTTCTGTA
CCTTCAATCTACGAGGTTCGAGAATGGTTTAAGATCAGAAATTAGAACCCTTGTCAAAACCATCGTAGTAAGATATGATTATGCAGAATTGGTGGACGAGACTCTACACA
TTGAAAAGAATTTAAAAGGAAAACGACCAAGTTTGGTGGTAAGTGGAGAAGGAGAAAAAGAAAGTGTTGAAGATTTTAGTAAAATGTCTAAGCCTACATTTAGTCGAGGA
TCAGATTGGAGTGGCGATACAAGGTTTGGGTGTATCCGAATGCAACAAAAGACATTTTGGGGCTTGTAA
Protein sequenceShow/hide protein sequence
MFTLALLSENPISYTFVIHLGRASIELASGSFKFLLYLQSTRFENGLRSEIRTLVKTIVVRYDYAELVDETLHIEKNLKGKRPSLVVSGEGEKESVEDFSKMSKPTFSRG
SDWSGDTRFGCIRMQQKTFWGL