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CsaV3_3G031810 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_3G031810
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description30-kDa cleavage and polyadenylation specificity factor 30-like
Genome locationchr3:27509493..27509677
RNA-Seq ExpressionCsaV3_3G031810
SyntenyCsaV3_3G031810
Gene Ontology termsGO:0000381 - regulation of alternative mRNA splicing, via spliceosome (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:1990247 - N6-methyladenosine-containing RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039343.1 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var. makuwa]2.8e-1991.8Show/hide
Query:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGIS
Subjt:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
KAE8650922.1 hypothetical protein Csa_000835, partial [Cucumis sativus]6.0e-22100Show/hide
Query:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
Subjt:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
TYK00526.1 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var. makuwa]2.8e-1991.8Show/hide
Query:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGIS
Subjt:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
XP_004141524.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus]7.4e-2095.08Show/hide
Query:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        VPALVTQGVTGKPSAAES NVQQQQGQQ APQASQTPVQSLSNGQPNQLNRNA SLPQGIS
Subjt:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
XP_008459517.1 PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo]2.8e-1991.8Show/hide
Query:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGIS
Subjt:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
TrEMBL top hitse value%identityAlignment
A0A0A0KSR6 Uncharacterized protein3.6e-2095.08Show/hide
Query:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        VPALVTQGVTGKPSAAES NVQQQQGQQ APQASQTPVQSLSNGQPNQLNRNA SLPQGIS
Subjt:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
A0A1S3CAV8 30-kDa cleavage and polyadenylation specificity factor 30-like1.4e-1991.8Show/hide
Query:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGIS
Subjt:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
A0A5A7T8Q5 30-kDa cleavage and polyadenylation specificity factor 30-like1.4e-1991.8Show/hide
Query:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGIS
Subjt:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
A0A5D3BQI0 30-kDa cleavage and polyadenylation specificity factor 30-like1.4e-1991.8Show/hide
Query:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        VPA+ TQGVTGKPSAAESANVQQQQGQQ APQASQTPVQ+LSNGQPNQLNRNA SLPQGIS
Subjt:  VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
A0A5D3C2W1 30-kDa cleavage and polyadenylation specificity factor 301.9e-1380Show/hide
Query:  PALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
        PA VTQGV GKPS AESANVQQQQ QQ A Q SQT +QS+SNGQPNQLNR A SLPQGIS
Subjt:  PALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGIS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCTGCAGCAGAATCTGCTAATGTCCAACAACAGCAAGGTCAACAGTTTGCACCACAAGCCAGCCAGACTCC
AGTACAAAGTCTTTCTAATGGCCAGCCTAATCAATTAAACAGAAATGCAATGTCTTTGCCTCAAGGAATATCTAG
mRNA sequenceShow/hide mRNA sequence
GTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCTGCAGCAGAATCTGCTAATGTCCAACAACAGCAAGGTCAACAGTTTGCACCACAAGCCAGCCAGACTCC
AGTACAAAGTCTTTCTAATGGCCAGCCTAATCAATTAAACAGAAATGCAATGTCTTTGCCTCAAGGAATATCTAG
Protein sequenceShow/hide protein sequence
VPALVTQGVTGKPSAAESANVQQQQGQQFAPQASQTPVQSLSNGQPNQLNRNAMSLPQGISX