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CsaV3_4G031840 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_4G031840
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr4:22396882..22397178
RNA-Seq ExpressionCsaV3_4G031840
SyntenyCsaV3_4G031840
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.6e-3885.71Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATP SQSD   +SNP+ ESS NPSVPTSTLFLLSNICNLVPIRLDS NYVLWKYQVSSILKAHSLFGHIDD+LPCPPK L SST GTN EINPEYLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-3884.69Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATP SQSD  E+SNP+LESS N  VPTSTLFLLSNICNLVPIRLDS NY+LWKYQVSSILKAHS FGHIDD+LPCPPK LSSST GTN EINPEYLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
KAE8649781.1 hypothetical protein Csa_012983 [Cucumis sativus]3.0e-47100Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.1e-3783.67Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATP  QSD  ++SNP+ ESS NP VPTSTLFLLSNICNLVPIRLDS NYVLWKYQVSSILKAHSLFGHIDD+LPCPPK L SST GTN EINPEYLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-3683.67Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATP SQSD  E+SNP+ ESS NPSV TSTLFLLSNICNLVPIRLDS NYVLWKYQVSSILKAHSLFGHIDD+LPCPPK L SST GTN +INP YLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
TrEMBL top hitse value%identityAlignment
A0A0A0L1J8 Retrotran_gag_3 domain-containing protein6.1e-4697.96Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATP SQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSS LKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
A0A5A7UTE5 Putative mitochondrial protein1.1e-3682.65Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATP  QSD  ++SNP+ ESS NP VPTSTLFLLSNICNLVPIRLDS NYVLWKYQVSSILKAHSLFGHIDD+LPCPPK L SST GTN EINP+YLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
A0A5A7UZE5 Putative mitochondrial protein4.6e-3885.71Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATP SQSD   +SNP+ ESS NPSVPTSTLFLLSNICNLVPIRLDS NYVLWKYQVSSILKAHSLFGHIDD+LPCPPK L SST GTN EINPEYLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
A0A5A7VGG0 Retrotransposon protein3.6e-3884.69Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATP SQSD  E+SNP+LESS N  VPTSTLFLLSNICNLVPIRLDS NY+LWKYQVSSILKAHS FGHIDD+LPCPPK LSSST GTN EINPEYLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
A0A5D3BEU0 Putative mitochondrial protein3.9e-3783.67Show/hide
Query:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
        MATP  QSD  ++SNP+ ESS NP VPTSTLFLLSNICNLVPIRLDS NYVLWKYQVSSILKAHSLFGHIDD+LPCPPK L SST GTN EINPEYLQ
Subjt:  MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCCCTGGCTCCCAATCTGATCCTATTGAATCTTCCAATCCTGTTCTCGAATCCTCACCAAATCCATCTGTTCCGACCTCTACTCTTTTCTTGCTATCC
AACATCTGCAATCTTGTACCCATCCGACTGGACTCTATGAATTATGTTTTATGGAAATATCAAGTTTCCTCCATCCTCAAAGCTCATTCCCTCTTTGGTCACATT
GATGATTCCCTTCCCTGCCCTCCAAAAAAATTATCATCGTCGACAGCTGGAACTAATCCTGAAATCAACCCTGAATATCTCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACCCCTGGCTCCCAATCTGATCCTATTGAATCTTCCAATCCTGTTCTCGAATCCTCACCAAATCCATCTGTTCCGACCTCTACTCTTTTCTTGCTATCC
AACATCTGCAATCTTGTACCCATCCGACTGGACTCTATGAATTATGTTTTATGGAAATATCAAGTTTCCTCCATCCTCAAAGCTCATTCCCTCTTTGGTCACATT
GATGATTCCCTTCCCTGCCCTCCAAAAAAATTATCATCGTCGACAGCTGGAACTAATCCTGAAATCAACCCTGAATATCTCCAATGA
Protein sequenceShow/hide protein sequence
MATPGSQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSILKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ