; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsaV3_6G006830 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_6G006830
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description60S ribosomal protein L38
Genome locationchr6:5587006..5591791
RNA-Seq ExpressionCsaV3_6G006830
SyntenyCsaV3_6G006830
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]9.5e-126100Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK

Query:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNLPSWDLVWWIRCIKDLLLEGFFCGKFLCFADSLTPFPSVALPFVGQYSGS
        DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNLPSWDLVWWIRCIKDLLLEGFFCGKFLCFADSLTPFPSVALPFVGQYSGS
Subjt:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNLPSWDLVWWIRCIKDLLLEGFFCGKFLCFADSLTPFPSVALPFVGQYSGS

Query:  WFECTRSVKEWLKFSRDHRDED
        WFECTRSVKEWLKFSRDHRDED
Subjt:  WFECTRSVKEWLKFSRDHRDED

KAF3497693.1 hypothetical protein DY000_02056630 [Brassica cretica]2.1e-5683.92Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPV   T    ++  SL      PKQIHEIKDFLLTARRKD
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        ARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

KAG6512538.1 hypothetical protein ZIOFF_030659 [Zingiber officinale]8.2e-5362.87Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRG-------------------------
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPV +  +    L G                         
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRG-------------------------

Query:  ------------------SLCSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDY--------DPR
                          S      +PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPP +         PR
Subjt:  ------------------SLCSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDY--------DPR

Query:  NL
        NL
Subjt:  NL

KAG6515258.1 hypothetical protein ZIOFF_025650 [Zingiber officinale]3.3e-5467.01Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTL-----------------HNQQLR---------
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPV +  +                    QLR         
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTL-----------------HNQQLR---------

Query:  -----GSLCSATKM-------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDY--------DPRNL
             G L S+T M       PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPP +         PRNL
Subjt:  -----GSLCSATKM-------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDY--------DPRNL

KVH95117.1 Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus]1.6e-5684.62Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPV +L+     +    C     PKQIHEIKDFLLTARRKD
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        ARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPP
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

TrEMBL top hitse value%identityAlignment
A0A0D9X019 Uncharacterized protein1.5e-5278.47Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK
        MPKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPP   LT+               PKQIHEIKDFLLTARRK
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRK

Query:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        DARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPP
Subjt:  DARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

A0A103XQP8 Ribosomal protein L38e (Fragment)7.7e-5784.62Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPV +L+     +    C     PKQIHEIKDFLLTARRKD
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        ARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPP
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

A0A498I9U8 Uncharacterized protein9.8e-3662.33Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLH--NQQLRGSLCSATK----------------
        +PKQIHEIKDFLLTARRKDARSVKIK++KD VKFKV CSKYLYTLCVFDS+KADKLKQSLPP    T H  + QL     +                   
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLH--NQQLRGSLCSATK----------------

Query:  -------MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS
               +PKQ HE+KDFLLTARRKDA SVK KR  DVVKFKVRC+
Subjt:  -------MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS

A0A4S4DHN9 Uncharacterized protein5.9e-4162.65Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP---VRVLTLHNQQLRGSLCSATK----------------
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS+YLYTLCVFDSEKADKLKQSLPP       T +    +  L   ++                
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP---VRVLTLHNQQLRGSLCSATK----------------

Query:  ------MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
               PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+++         E+A  +KQ+L
Subjt:  ------MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL

A0A6A2WU09 60S ribosomal protein L381.3e-4353.81Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHN-------------------QQLRGSLCSATK
        PKQIHEIKDFLLTARRKDAR VKIK+S+DVVKFKVRCSKYLYTLC+ D++KADKLKQSLPP ++L ++                     +++  L +A +
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHN-------------------QQLRGSLCSATK

Query:  -----------------MPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEK
                          PKQIHEIKDFLLTARR                               KDARSVKIK+S+DVVKFKVRCSKYLYTL V D EK
Subjt:  -----------------MPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEK

Query:  ADKLKQSLPP
        ADKLKQSLPP
Subjt:  ADKLKQSLPP

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L382.8e-2786.96Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP    ++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL

P46291 60S ribosomal protein L383.4e-2582.61Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPP    ++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL

Q32PB9 60S ribosomal protein L381.5e-2079.03Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPP
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

Q95V84 60S ribosomal protein L389.2e-2385.48Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPP
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

Q9JJI8 60S ribosomal protein L385.0e-2172.46Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPP    ++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family2.0e-2886.96Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP    ++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL

AT3G59540.1 Ribosomal L38e protein family2.0e-2886.96Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP    ++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTTGTGAAGTTCAAAGTTCG
ATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGTTAGGGTTTTGACCCTCCATAATCAGCAACTAC
GCGGCAGTCTCTGTTCTGCCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGC
AAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGATTATGA
CCCAAGAAACCTCCCGTCTTGGGACCTTGTGTGGTGGATTCGATGCATAAAAGACTTGCTTCTTGAGGGATTTTTTTGTGGCAAGTTTCTCTGCTTTGCTGACAGCCTGA
CACCCTTTCCTTCTGTCGCGTTACCTTTTGTGGGTCAGTATTCTGGATCATGGTTTGAGTGTACAAGATCTGTGAAAGAATGGTTGAAGTTTTCTCGTGATCACAGGGAT
GAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTTGTGAAGTTCAAAGTTCG
ATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGTTAGGGTTTTGACCCTCCATAATCAGCAACTAC
GCGGCAGTCTCTGTTCTGCCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGC
AAGGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCCCTTCCACCAGATTATGA
CCCAAGAAACCTCCCGTCTTGGGACCTTGTGTGGTGGATTCGATGCATAAAAGACTTGCTTCTTGAGGGATTTTTTTGTGGCAAGTTTCTCTGCTTTGCTGACAGCCTGA
CACCCTTTCCTTCTGTCGCGTTACCTTTTGTGGGTCAGTATTCTGGATCATGGTTTGAGTGTACAAGATCTGTGAAAGAATGGTTGAAGTTTTCTCGTGATCACAGGGAT
GAGGACTAG
Protein sequenceShow/hide protein sequence
MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPVRVLTLHNQQLRGSLCSATKMPKQIHEIKDFLLTARRKDARSVKIKRS
KDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDYDPRNLPSWDLVWWIRCIKDLLLEGFFCGKFLCFADSLTPFPSVALPFVGQYSGSWFECTRSVKEWLKFSRDHRD
ED