; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsaV3_6G007780 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_6G007780
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionLight-regulated protein-like
Genome locationchr6:6244426..6245641
RNA-Seq ExpressionCsaV3_6G007780
SyntenyCsaV3_6G007780
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039854.1 light-regulated protein-like [Cucumis melo var. makuwa]6.8e-6694.89Show/hide
Query:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP
        MQ QAALSIA PSCSLLPPTAK MAFSI TRS+PRQSKGTLKAKASAVGQ+PSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG+SVTEP
Subjt:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP

Query:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

NP_001267523.1 light-regulated protein-like [Cucumis sativus]3.5e-70100Show/hide
Query:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP
        MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP
Subjt:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP

Query:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_008459906.1 PREDICTED: light-regulated protein-like [Cucumis melo]2.0e-6594.16Show/hide
Query:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP
        MQ QAALSIA PSCSLLPPTAK MAFSI TRS+PRQS+GTLKAKASAVGQ+PSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG+SVTEP
Subjt:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP

Query:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_022953556.1 light-regulated protein-like [Cucurbita moschata]3.2e-5582.52Show/hide
Query:  MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQ QAA S+A P SC LLPPT K MAFSIP+RSM R       +  LKAKASAVGQDPSTVDYSSMSSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  NSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  NSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_038906788.1 light-regulated protein, chloroplastic-like [Benincasa hispida]3.4e-5783.92Show/hide
Query:  MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQ QAALS+A+P SCSLLPPTAKSMAFS+ +RS+ R       +  LKAKASAVGQDPSTVDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK 
Subjt:  MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  NSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SVTEPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  NSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

TrEMBL top hitse value%identityAlignment
A0A1S3CBQ8 light-regulated protein-like9.6e-6694.16Show/hide
Query:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP
        MQ QAALSIA PSCSLLPPTAK MAFSI TRS+PRQS+GTLKAKASAVGQ+PSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG+SVTEP
Subjt:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP

Query:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A5D3DLY7 Light-regulated protein-like3.3e-6694.89Show/hide
Query:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP
        MQ QAALSIA PSCSLLPPTAK MAFSI TRS+PRQSKGTLKAKASAVGQ+PSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG+SVTEP
Subjt:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP

Query:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1GNA5 light-regulated protein-like1.5e-5582.52Show/hide
Query:  MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQ QAA S+A P SC LLPPT K MAFSIP+RSM R       +  LKAKASAVGQDPSTVDYSSMSSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  NSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  NSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1JSC1 light-regulated protein, chloroplastic-like5.8e-5581.12Show/hide
Query:  MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQ QAA S+A P SC LLPPT K MAFS+P+RSM R       +  LKAKASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQFQAALSIASP-SCSLLPPTAKSMAFSIPTRSMPRQ-----SKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  NSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  NSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

Q39636 CR9 protein1.7e-70100Show/hide
Query:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP
        MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP
Subjt:  MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEP

Query:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  VEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic1.5e-2348.82Show/hide
Query:  QAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEA--KKGNSVTEPV
        Q A S      ++LP   K  +  I     PR+    ++A A+AV  + + VDYSS  SVFP EACD +GGEAC+V+MYPE KL   A      +  E V
Subjt:  QAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEA--KKGNSVTEPV

Query:  EREYLQYDSPKTVFPAEACDDLGGEFC
        +R+YL YD P TVFP EACDDLGGEFC
Subjt:  EREYLQYDSPKTVFPAEACDDLGGEFC

Q96500 Light-regulated protein 1, chloroplastic1.8e-2448.44Show/hide
Query:  SIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDY-SSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYL
        S++SP  + L P A   +     RS    S       +S++  DP+TVDY SS+ SVFPAEAC+ + G AC  ++YPEVKL  +       +EPV+REY 
Subjt:  SIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDY-SSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYL

Query:  QYDSPKTVFPAEACDDLGGEFCDPEYQK
        +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  QYDSPKTVFPAEACDDLGGEFCDPEYQK

Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like1.3e-2548.44Show/hide
Query:  SIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDY-SSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYL
        S++SP  + L P A   +     RS    S       +S++  DP+TVDY SS+ SVFPAEAC+ + G AC  ++YPEVKL  +       +EPV+REY 
Subjt:  SIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDY-SSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYL

Query:  QYDSPKTVFPAEACDDLGGEFCDPEYQK
        +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  QYDSPKTVFPAEACDDLGGEFCDPEYQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTCCAGGCAGCTCTTTCCATAGCATCTCCATCATGCTCCCTCCTCCCACCAACAGCCAAATCAATGGCCTTCTCAATCCCAACGAGGTCCATGCCAAGGCAAAG
CAAAGGAACCCTAAAAGCAAAGGCAAGTGCAGTAGGACAAGACCCTTCAACTGTTGACTACAGCTCCATGTCCTCTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAG
GTGAAGCTTGTGATGTGGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAAAAAGGGAATAGTGTTACAGAGCCAGTTGAGAGAGAGTATCTACAATATGACAGT
CCCAAGACAGTCTTTCCAGCGGAGGCTTGTGATGATTTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTTCCAGGCAGCTCTTTCCATAGCATCTCCATCATGCTCCCTCCTCCCACCAACAGCCAAATCAATGGCCTTCTCAATCCCAACGAGGTCCATGCCAAGGCAAAG
CAAAGGAACCCTAAAAGCAAAGGCAAGTGCAGTAGGACAAGACCCTTCAACTGTTGACTACAGCTCCATGTCCTCTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAG
GTGAAGCTTGTGATGTGGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAAAAAGGGAATAGTGTTACAGAGCCAGTTGAGAGAGAGTATCTACAATATGACAGT
CCCAAGACAGTCTTTCCAGCGGAGGCTTGTGATGATTTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG
Protein sequenceShow/hide protein sequence
MQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGNSVTEPVEREYLQYDS
PKTVFPAEACDDLGGEFCDPEYQKGVY