CuGenDBv2

Gene ID	CsaV3_7G007730
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Photosystem I reaction centre subunit N
Genome location	chr7:4808561..4810245
RNA-Seq Expression	CsaV3_7G007730
Synteny	CsaV3_7G007730
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009522 - photosystem I (cellular component)
InterPro domains	IPR008796 - Photosystem I reaction centre subunit N, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136934.1 uncharacterized protein LOC101214221 [Cucumis sativus]

2.1e-56

100

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDY
        MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDY
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDY

Query:  FEFVEGSVKNKNELSEAEKGIVEWLKRSK
        FEFVEGSVKNKNELSEAEKGIVEWLKRSK
Subjt:  FEFVEGSVKNKNELSEAEKGIVEWLKRSK

XP_008455049.1 PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo]

1.7e-50

93.85

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPAS-AAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKD
        MSSIGQSILMALAVTLNKFASSNVQSVQRNK  ATATVSSPIGRR LLLST+APAS AAAA+ VDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKD
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPAS-AAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKD

Query:  YFEFVEGSVKNKNELSEAEKGIVEWLKRSK
        YFEFVEGSVKNKNELSEAEKGIVEWLKR+K
Subjt:  YFEFVEGSVKNKNELSEAEKGIVEWLKRSK

XP_022927848.1 uncharacterized protein LOC111434615 [Cucurbita moschata]

1.0e-39

74.1

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK----------ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLE
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK           +A+ + SS I RR LLL      SAA A+ VDSRTELLKRYLKKSEENKEKNDKERLE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK----------ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLE

Query:  SYYKRNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK
        S+YKRNYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKR+K
Subjt:  SYYKRNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK

XP_022989008.1 uncharacterized protein LOC111486201 [Cucurbita maxima]

3.2e-41

78.36

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK-----ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKR
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK      TAT + SS I RR LLL      SAA A+ VDSRTELLKRYLKKSEENKEKNDKERLES+YKR
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK-----ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKR

Query:  NYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK
        NYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKR+K
Subjt:  NYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK

XP_038887440.1 uncharacterized protein LOC120077574 [Benincasa hispida]

1.5e-46

84.96

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKA----TATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRN
        MSSIGQSILMALAVTLNKFASSNVQSVQRN+A    TATAT  S IGRR LLLS +A A+A     VDSRTELLKRYLKKSEENKEKNDKERLESYYKRN
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKA----TATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRN

Query:  YKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK
        YKDYFEFVEGSVKNKNELSEAEKGI+EWLKR+K
Subjt:  YKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C176 uncharacterized protein LOC103495319

8.2e-51

93.85

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPAS-AAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKD
        MSSIGQSILMALAVTLNKFASSNVQSVQRNK  ATATVSSPIGRR LLLST+APAS AAAA+ VDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKD
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPAS-AAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKD

Query:  YFEFVEGSVKNKNELSEAEKGIVEWLKRSK
        YFEFVEGSVKNKNELSEAEKGIVEWLKR+K
Subjt:  YFEFVEGSVKNKNELSEAEKGIVEWLKRSK

A0A2I4HLI8 uncharacterized protein LOC109019213

1.8e-34

68.66

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK----ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRN
        MSSIGQSILMAL VT+N+FASSNVQ+V R +    ++ T T +S IGRR LLLSTL     AA    DSRT+LLK+YLKKSEENK KNDKERL+SYYKRN
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK----ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRN

Query:  YKDYFEFVEGSVK-NKNELSEAEKGIVEWLKRSK
        YKDYFEFVEG+ K N+ +LSEAEKGI++WL+R+K
Subjt:  YKDYFEFVEGSVK-NKNELSEAEKGIVEWLKRSK

A0A6J1D574 uncharacterized protein LOC111017388 isoform X1

1.9e-39

77.52

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDY
        MSSIGQSILMALAVT+NKFASSNVQSV RN++ A A  +S IGRR LL S    A AAA + VDSRTELLKRYLKKSE+NKEKNDKERL+SYYKRNYKDY
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDY

Query:  FEFVEGSVKNKNELSEAEKGIVEWLKRSK
        FEFVEGSV+NK+ELSE EK I+EWL+R+K
Subjt:  FEFVEGSVKNKNELSEAEKGIVEWLKRSK

A0A6J1EM63 uncharacterized protein LOC111434615

5.0e-40

74.1

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK----------ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLE
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK           +A+ + SS I RR LLL      SAA A+ VDSRTELLKRYLKKSEENKEKNDKERLE
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK----------ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLE

Query:  SYYKRNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK
        S+YKRNYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKR+K
Subjt:  SYYKRNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK

A0A6J1JNZ7 uncharacterized protein LOC111486201

1.6e-41

78.36

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK-----ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKR
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK      TAT + SS I RR LLL      SAA A+ VDSRTELLKRYLKKSEENKEKNDKERLES+YKR
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK-----ATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKR

Query:  NYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK
        NYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKR+K
Subjt:  NYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRSK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49975.1 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

5.5e-31

60.15

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSP--IGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYK
        MSSI QSILMAL VT+NK+ASSNVQ+V+RN     +  + P  +GRR++L S+ +  +AA  S+     +LL++YLKK+EENK KNDKERL+S+YKRNYK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSP--IGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYK

Query:  DYFEFVEGSVKNKN--ELSEAEKGIVEWLKRSK
        DYFEFVEGS+K K   ELSE+EK I+EWLK +K
Subjt:  DYFEFVEGSVKNKN--ELSEAEKGIVEWLKRSK

Sequences

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CDS sequence

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ATGAGTTCCATTGGCCAAAGCATTCTCATGGCCTTAGCCGTCACTCTCAACAAATTTGCTTCTTCCAACGTTCAATCCGTTCAAAGAAACAAAGCCACCGCCACCGCCAC
CGTCTCTTCACCAATTGGAAGAAGAAGCCTCCTCTTGTCCACCCTTGCCCCCGCCTCCGCCGCCGCCGCCTCCACGGTCGACTCCAGAACAGAGCTGCTAAAAAGGTACC
TCAAGAAGTCTGAAGAGAACAAAGAAAAGAATGACAAGGAGAGATTGGAAAGTTACTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTGGAAGGATCGGTGAAGAAC
AAGAACGAACTTTCCGAAGCTGAAAAAGGTATTGTTGAGTGGCTTAAACGAAGTAAATGA

mRNA sequence

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Protein sequence

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MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATATVSSPIGRRSLLLSTLAPASAAAASTVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYFEFVEGSVKN
KNELSEAEKGIVEWLKRSK

CsaV3_7G007730 (gene) of Cucumber (Chinese Long) v3 genome