; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsaV3_7G008550 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_7G008550
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionCold regulated protein 27, putative isoform 2
Genome locationchr7:5307524..5311404
RNA-Seq ExpressionCsaV3_7G008550
SyntenyCsaV3_7G008550
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031301.1 Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa]1.1e-8673.47Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
        MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLDAEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQK
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK

Query:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC
        MRRKPI  D SSSE+         + +I                       H  S  KQCSLETPDLLEEC SCSDRRHIR+MTNSC SARNSQ TRPCC
Subjt:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC

Query:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQ
         NSYTIITEVSDQNFVDNQPGELS GMP AKRLKKASS F D+AQ
Subjt:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQ

XP_004136978.1 cold-regulated protein 27 isoform X1 [Cucumis sativus]1.6e-10984.19Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
        MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK

Query:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC
        MRRKPIRPDISSSE+         + +I                       H  S  KQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC
Subjt:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC

Query:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS
        CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS
Subjt:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS

XP_008454952.1 PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo]3.4e-9174.31Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
        MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLDAEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQK
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK

Query:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC
        MRRKPI  D SSSE+         + +I                       H  S  KQCSLETPDLLEEC SCSDRRHIR+MTNSC SARNSQ TRPCC
Subjt:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC

Query:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS
         NSYTIITEVSDQNFVDNQPGELS GMP AKRLKKASS F D+AQVVPFKRLS
Subjt:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS

XP_008454953.1 PREDICTED: uncharacterized protein LOC103495241 isoform X2 [Cucumis melo]8.6e-10388.69Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
        MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLDAEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQK
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK

Query:  MRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKR
        MRRKPI  D SSSEVRQHIHKKSGRKQCSLETPDLLEEC SCSDRRHIR+MTNSC SARNSQ TRPCC NSYTIITEVSDQNFVDNQPGELS GMP AKR
Subjt:  MRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKR

Query:  LKKASSDFSDSAQVVPFKRLS
        LKKASS F D+AQVVPFKRLS
Subjt:  LKKASSDFSDSAQVVPFKRLS

XP_011658902.1 cold-regulated protein 28 isoform X2 [Cucumis sativus]4.1e-121100Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
        MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK

Query:  MRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKR
        MRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKR
Subjt:  MRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKR

Query:  LKKASSDFSDSAQVVPFKRLS
        LKKASSDFSDSAQVVPFKRLS
Subjt:  LKKASSDFSDSAQVVPFKRLS

TrEMBL top hitse value%identityAlignment
A0A0A0K7Z2 Uncharacterized protein7.8e-11084.19Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
        MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK

Query:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC
        MRRKPIRPDISSSE+         + +I                       H  S  KQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC
Subjt:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC

Query:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS
        CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS
Subjt:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS

A0A1S3BZQ8 uncharacterized protein LOC103495241 isoform X24.2e-10388.69Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
        MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLDAEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQK
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK

Query:  MRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKR
        MRRKPI  D SSSEVRQHIHKKSGRKQCSLETPDLLEEC SCSDRRHIR+MTNSC SARNSQ TRPCC NSYTIITEVSDQNFVDNQPGELS GMP AKR
Subjt:  MRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKR

Query:  LKKASSDFSDSAQVVPFKRLS
        LKKASS F D+AQVVPFKRLS
Subjt:  LKKASSDFSDSAQVVPFKRLS

A0A1S3BZU8 uncharacterized protein LOC103495241 isoform X11.6e-9174.31Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
        MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLDAEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQK
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK

Query:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC
        MRRKPI  D SSSE+         + +I                       H  S  KQCSLETPDLLEEC SCSDRRHIR+MTNSC SARNSQ TRPCC
Subjt:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC

Query:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS
         NSYTIITEVSDQNFVDNQPGELS GMP AKRLKKASS F D+AQVVPFKRLS
Subjt:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS

A0A5D3C4A3 Cold regulated protein 27, putative isoform 25.5e-8773.47Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK
        MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLDAEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQK
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQK

Query:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC
        MRRKPI  D SSSE+         + +I                       H  S  KQCSLETPDLLEEC SCSDRRHIR+MTNSC SARNSQ TRPCC
Subjt:  MRRKPIRPDISSSEV---------RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCC

Query:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQ
         NSYTIITEVSDQNFVDNQPGELS GMP AKRLKKASS F D+AQ
Subjt:  CNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQ

A0A6J1GJF7 uncharacterized protein LOC111454842 isoform X32.1e-7067.74Show/hide
Query:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSK---HFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSP
        M D+HTPS +SPP+ADR+SPM +++  +D T  NSES+SSS T+D S+       SHHC QLDA QTHWT+EKHRL+LDSLEASFVQDLH++R + ALS 
Subjt:  MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSK---HFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSP

Query:  KQKMRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPI
        KQKMRRKPI P+ISSSEVRQ+IH KSGR QC+LET D+LEEC SCSDR HIR  TNS +SAR+SQ   PCC +S+TI+TEVSDQNFVD  PGELS G PI
Subjt:  KQKMRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPI

Query:  AKRLKKASSDFSDSAQV
         KRLKKASSD S + +V
Subjt:  AKRLKKASSDFSDSAQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGACTCTCATACGCCGTCGTTTCTCTCCCCGCCGCTTGCAGATCGACAATCACCCATGCCGCTGGCCTCTGCTACTACCGACTCCACTGGCTTCAACTCGGAATC
TCACTCTTCTTCCATTACTCTTGATGGGTCCAAGCATTTTTTCGATTCTCATCATTGTTCGCAACTGGATGCGGAGCAAACACATTGGACAGACGAGAAACATAGATTAT
ATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCAACATAGGCCTATGCATGCTTTATCCCCAAAACAGAAGATGCGTCGGAAGCCGATCAGGCCTGATATA
TCTTCTTCAGAGGTGAGGCAACACATCCACAAAAAGAGTGGGAGAAAGCAGTGTAGTTTGGAAACTCCTGATCTCCTTGAAGAATGTGAAAGTTGTAGTGATAGGAGACA
CATAAGATACATGACGAACTCCTGTAGATCTGCCAGAAATTCTCAGCCGACCCGTCCATGCTGTTGTAATTCTTATACAATCATTACAGAAGTTTCAGATCAAAACTTTG
TGGATAATCAACCAGGAGAGTTGTCTAGTGGCATGCCTATTGCAAAAAGATTAAAGAAAGCTTCTTCTGATTTTTCAGACAGTGCCCAGGTTGTACCATTTAAAAGATTA
TCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGACTCTCATACGCCGTCGTTTCTCTCCCCGCCGCTTGCAGATCGACAATCACCCATGCCGCTGGCCTCTGCTACTACCGACTCCACTGGCTTCAACTCGGAATC
TCACTCTTCTTCCATTACTCTTGATGGGTCCAAGCATTTTTTCGATTCTCATCATTGTTCGCAACTGGATGCGGAGCAAACACATTGGACAGACGAGAAACATAGATTAT
ATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCAACATAGGCCTATGCATGCTTTATCCCCAAAACAGAAGATGCGTCGGAAGCCGATCAGGCCTGATATA
TCTTCTTCAGAGGTGAGGCAACACATCCACAAAAAGAGTGGGAGAAAGCAGTGTAGTTTGGAAACTCCTGATCTCCTTGAAGAATGTGAAAGTTGTAGTGATAGGAGACA
CATAAGATACATGACGAACTCCTGTAGATCTGCCAGAAATTCTCAGCCGACCCGTCCATGCTGTTGTAATTCTTATACAATCATTACAGAAGTTTCAGATCAAAACTTTG
TGGATAATCAACCAGGAGAGTTGTCTAGTGGCATGCCTATTGCAAAAAGATTAAAGAAAGCTTCTTCTGATTTTTCAGACAGTGCCCAGGTTGTACCATTTAAAAGATTA
TCCTAA
Protein sequenceShow/hide protein sequence
MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDI
SSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRL
S