; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsaV3_7G025320 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_7G025320
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionHistone H3.2
Genome locationchr7:14654006..14663986
RNA-Seq ExpressionCsaV3_7G025320
SyntenyCsaV3_7G025320
Gene Ontology termsGO:0000786 - nucleosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000164 - Histone H3/CENP-A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659152.1 histone H3-1 isoform X1 [Cucumis sativus]5.0e-65100Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

XP_011659153.1 histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus]7.4e-77100Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

XP_022156549.1 histone H3-like centromeric protein HTR12 [Momordica charantia]6.7e-6283.12Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHP +R +NR P GSG A SSP  PSTPL GRTQNVRQAQ+  +RT  KK+RFRPGTVAL+EIR  QK+WNLLIPAS FIRAVKEVS QLAP+ITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

XP_022959605.1 histone H3-like centromeric protein HTR12 [Cucurbita moschata]2.8e-6082.47Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPGTVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

XP_038896752.1 histone H3-like centromeric protein HTR12 [Benincasa hispida]2.5e-6991.56Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPP+RKSNR PSG+GAAQSSP APSTPL+GRTQNV QAQ+S  RT KKKKRFRPGTVAL+EIR+LQKSWNLLIPASCFIRAVKEVS QLAPQITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

TrEMBL top hitse value%identityAlignment
A0A0A0K4F4 Histone H3.22.4e-65100Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

A0A1S3CG56 Histone H3.21.1e-4981.95Show/hide
Query:  SSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKK--RFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLF
        S   +PS P +       + Q SS  TIK K+  RFRPGTVAL+EIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLF
Subjt:  SSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKK--RFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLF

Query:  EDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        EDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Subjt:  EDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

A0A6J1DTT5 Histone H3.23.2e-6283.12Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARARHP +R +NR P GSG A SSP  PSTPL GRTQNVRQAQ+  +RT  KK+RFRPGTVAL+EIR  QK+WNLLIPAS FIRAVKEVS QLAP+ITR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

A0A6J1H6R9 Histone H3.21.4e-6082.47Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPGTVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

A0A6J1KTZ4 Histone H3.21.4e-6082.47Show/hide
Query:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR
        MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ RQ Q+  SRT  KK+RFRPGTVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TR
Subjt:  MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITR

Query:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        WQAEAL+ALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Subjt:  WQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

SwissProt top hitse value%identityAlignment
Q59LN9 Histone H3-like centromeric protein CSE41.3e-2353.12Show/hide
Query:  STPLNGRTQNVRQAQNSSSRTIKK-KKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVS-NQLAPQI-TRWQAEALVALQEAAEDFLVHLFEDTML
        ++ L  RT   R   N   RT+ + KKR+RPGT AL+EIR  QKS +LLI    F R V+E+S + + P    RWQ+ A++ALQEA+E FL+HL EDT L
Subjt:  STPLNGRTQNVRQAQNSSSRTIKK-KKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVS-NQLAPQI-TRWQAEALVALQEAAEDFLVHLFEDTML

Query:  CAIHAKRVTIMKKDFELARRLGGKGRPW
        CAIHAKRVTIM+KD +LARR+  +G+ W
Subjt:  CAIHAKRVTIMKKDFELARRLGGKGRPW

Q6LCW8 Histone H3 type 26.4e-2359Show/hide
Query:  IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGK
        +KK  R+RPGTVAL+EIR  QKS  LLI    F R V+E++      + R+Q++A++ALQEAAE +LV LFEDT LCAIHAKRVTIM KD +LARR+ G+
Subjt:  IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGK

Q7RXR3 Histone H3-like centromeric protein hH3v7.3e-2749.32Show/hide
Query:  PPRRKS-NRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAP--QITRWQA
        PP++    ++ + S  A + PT  +TP   R       Q        KK+R+RPGT+ALKEIRN Q++ +LL+    F R V+E++ Q  P  +  RWQ+
Subjt:  PPRRKS-NRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAP--QITRWQA

Query:  EALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGG
        +A++ALQEAAE FLVHLFEDT LCAIHAKRVTIM+KD +LARR+ G
Subjt:  EALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGG

Q8RVQ9 Histone H3-like centromeric protein HTR129.2e-3863.31Show/hide
Query:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED
        G    Q++P T+P+T      +  RQA    S+  KK  R+RPGTVALKEIR+ QK  NLLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED
Subjt:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED

Query:  FLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        +LV LF D+MLCAIHA+RVT+M+KDFELARRLGGKGRPW
Subjt:  FLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

Q9Y812 Histone H3-like centromeric protein cnp11.5e-2458.82Show/hide
Query:  KKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQIT-----RWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRL
        +KKR+RPGT AL+EIR  Q+S +LLI    F R V+E+S++     +     RWQ+ AL  LQEAAE FLVHLFEDT LCAIHAKRVTIM++D +LARR+
Subjt:  KKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQIT-----RWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRL

Query:  GG
         G
Subjt:  GG

Arabidopsis top hitse value%identityAlignment
AT1G01370.1 Histone superfamily protein6.5e-3963.31Show/hide
Query:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED
        G    Q++P T+P+T      +  RQA    S+  KK  R+RPGTVALKEIR+ QK  NLLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED
Subjt:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED

Query:  FLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        +LV LF D+MLCAIHA+RVT+M+KDFELARRLGGKGRPW
Subjt:  FLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

AT1G01370.2 Histone superfamily protein6.5e-3963.31Show/hide
Query:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED
        G    Q++P T+P+T      +  RQA    S+  KK  R+RPGTVALKEIR+ QK  NLLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED
Subjt:  GSGAAQSSP-TAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAED

Query:  FLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
        +LV LF D+MLCAIHA+RVT+M+KDFELARRLGGKGRPW
Subjt:  FLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW

AT1G09200.1 Histone superfamily protein1.3e-2356.25Show/hide
Query:  RQAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMK
        + A+ S+  T  +KK  RFRPGTVAL+EIR  QKS  LLI    F R V+E++      + R+Q+ A+ ALQEAAE +LV LFEDT LCAIHAKRVTIM 
Subjt:  RQAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMK

Query:  KDFELARRLGGK
        KD +LARR+ G+
Subjt:  KDFELARRLGGK

AT1G19890.1 male-gamete-specific histone H31.0e-2353.51Show/hide
Query:  TQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI
        T+  R+ +      +K+  RFRPGTVAL+EIR  QKS +LLI    F R V+E++      + R+Q+ A++ALQEAAE +LV LFEDT LCAIHAKRVTI
Subjt:  TQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTI

Query:  MKKDFELARRLGGK
        M KD +LARR+ G+
Subjt:  MKKDFELARRLGGK

AT3G27360.1 Histone superfamily protein1.3e-2356.25Show/hide
Query:  RQAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMK
        + A+ S+  T  +KK  RFRPGTVAL+EIR  QKS  LLI    F R V+E++      + R+Q+ A+ ALQEAAE +LV LFEDT LCAIHAKRVTIM 
Subjt:  RQAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMK

Query:  KDFELARRLGGK
        KD +LARR+ G+
Subjt:  KDFELARRLGGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCGAGCCAGGCATCCACCCCGAAGAAAGTCCAATCGCACGCCATCAGGTTCTGGAGCTGCACAGTCTTCCCCAACTGCCCCTTCGACGCCACTTAATGGGAGAAC
GCAAAATGTCAGGCAAGCTCAAAACTCATCGTCAAGAACAATAAAGAAAAAAAAACGCTTCAGACCAGGGACAGTGGCATTAAAAGAAATTCGGAATCTCCAGAAATCAT
GGAATCTGCTAATTCCAGCTAGCTGTTTCATTCGAGCAGTGAAAGAAGTAAGCAACCAGTTGGCTCCACAGATTACGCGTTGGCAAGCTGAAGCTTTAGTAGCTCTTCAG
GAAGCAGCAGAAGATTTTTTGGTTCACCTATTTGAAGATACCATGCTGTGTGCTATTCATGCCAAACGTGTAACTATCATGAAAAAGGATTTTGAACTGGCACGTCGGTT
AGGAGGGAAAGGGAGGCCATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCGAGCCAGGCATCCACCCCGAAGAAAGTCCAATCGCACGCCATCAGGTTCTGGAGCTGCACAGTCTTCCCCAACTGCCCCTTCGACGCCACTTAATGGGAGAAC
GCAAAATGTCAGGCAAGCTCAAAACTCATCGTCAAGAACAATAAAGAAAAAAAAACGCTTCAGACCAGGGACAGTGGCATTAAAAGAAATTCGGAATCTCCAGAAATCAT
GGAATCTGCTAATTCCAGCTAGCTGTTTCATTCGAGCAGTGAAAGAAGTAAGCAACCAGTTGGCTCCACAGATTACGCGTTGGCAAGCTGAAGCTTTAGTAGCTCTTCAG
GAAGCAGCAGAAGATTTTTTGGTTCACCTATTTGAAGATACCATGCTGTGTGCTATTCATGCCAAACGTGTAACTATCATGAAAAAGGATTTTGAACTGGCACGTCGGTT
AGGAGGGAAAGGGAGGCCATGGTGA
Protein sequenceShow/hide protein sequence
MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQ
EAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW