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CsaV3_7G027770 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_7G027770
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRING-type E3 ubiquitin transferase
Genome locationchr7:17379641..17379966
RNA-Seq ExpressionCsaV3_7G027770
SyntenyCsaV3_7G027770
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646305.1 hypothetical protein Csa_016112, partial [Cucumis sativus]1.8e-53100Show/hide
Query:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
        MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
Subjt:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV

Query:  FHKDCIDR
        FHKDCIDR
Subjt:  FHKDCIDR

KAE8653247.1 hypothetical protein Csa_019633 [Cucumis sativus]9.9e-4487.04Show/hide
Query:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
        MPLSPSP+P LHS ILLPGF M LLT+ MLLLIVLF FI ILC KRSAKSD EEL ENLDIEAPIFHYN VEG EQECAICLCEIEEGEKCRKMKTCGHV
Subjt:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV

Query:  FHKDCIDR
        FHKDCIDR
Subjt:  FHKDCIDR

KAE8653251.1 hypothetical protein Csa_020059 [Cucumis sativus]1.5e-4487.04Show/hide
Query:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
        MPLSPSP+P LHS ILLPGF M L+TV MLLLIVLF FI ILC KRSAKSDGEE  ENLDIEAPIFHY+GVEGDEQEC ICLCEIEEGEKCRKMKTCGHV
Subjt:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV

Query:  FHKDCIDR
        FHKDCIDR
Subjt:  FHKDCIDR

XP_011648512.2 RING-H2 finger protein ATL79 [Cucumis sativus]1.5e-4487.04Show/hide
Query:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
        MPLSPSP+P LHS ILLPGF M L+TV MLLLIVLF FI ILC KRSAKSDGEE  ENLDIEAPIFHY+GVEGDEQEC ICLCEIEEGEKCRKMKTCGHV
Subjt:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV

Query:  FHKDCIDR
        FHKDCIDR
Subjt:  FHKDCIDR

XP_011659772.1 RING-H2 finger protein ATL39 [Cucumis sativus]1.8e-53100Show/hide
Query:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
        MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
Subjt:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV

Query:  FHKDCIDR
        FHKDCIDR
Subjt:  FHKDCIDR

TrEMBL top hitse value%identityAlignment
A0A0A0K790 RING-type domain-containing protein8.7e-54100Show/hide
Query:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
        MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
Subjt:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV

Query:  FHKDCIDR
        FHKDCIDR
Subjt:  FHKDCIDR

A0A0A0LUU6 RING-type E3 ubiquitin transferase1.0e-3385.06Show/hide
Query:  MDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDR
        M L+TV MLLLIVLF FI ILC KRSAK DGEE  +NLDIEAPIFHY+GVEG EQEC ICLCEIEEGEKCRKMKTCGHVFHKDCIDR
Subjt:  MDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDR

A0A0A0LY10 RING-type E3 ubiquitin transferase7.1e-4080.56Show/hide
Query:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV
        M LSPSP+PSLHSLILLP +I DLL   M L IVL  FI ILCRKRSAKSD EE PEN+DIEAPIFHY G EG EQ+CAICLCEIEEGEKCRKMKTCGHV
Subjt:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHV

Query:  FHKDCIDR
        FHKDCI R
Subjt:  FHKDCIDR

A0A1S3C741 RING-type E3 ubiquitin transferase7.6e-3472.48Show/hide
Query:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEG-DEQECAICLCEIEEGEKCRKMKTCGH
        +PL PSP+P LHS I+LP  I DLL + M LL+VL   I ILC KRSAKSD +EL +NL+I+APIFHY G++G DEQECAICLCEIEEGEKCRKMKTCGH
Subjt:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEG-DEQECAICLCEIEEGEKCRKMKTCGH

Query:  VFHKDCIDR
         FHKDCIDR
Subjt:  VFHKDCIDR

A0A5D3BG26 RING-type E3 ubiquitin transferase7.6e-3472.48Show/hide
Query:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEG-DEQECAICLCEIEEGEKCRKMKTCGH
        +PL PSP+P LHS I+LP  I DLL + M LL+VL   I ILC KRSAKSD +EL +NL+I+APIFHY G++G DEQECAICLCEIEEGEKCRKMKTCGH
Subjt:  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEG-DEQECAICLCEIEEGEKCRKMKTCGH

Query:  VFHKDCIDR
         FHKDCIDR
Subjt:  VFHKDCIDR

SwissProt top hitse value%identityAlignment
O22255 RING-H2 finger protein ATL648.5e-0636.76Show/hide
Query:  RKRSAKSDGEELPENLDIEAPIFHYNGVE----GDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCID
        R  SA    + L + +  + PIF Y+        +++EC++CL E EE ++ R +  CGH FH DCID
Subjt:  RKRSAKSDGEELPENLDIEAPIFHYNGVE----GDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCID

O22755 Probable E3 ubiquitin-protein ligase ATL446.5e-0654.05Show/hide
Query:  EGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDR
        EGD  ECAICL +  +GE+ R +  CGH FH +CID+
Subjt:  EGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDR

O64763 E3 ubiquitin-protein ligase ATL91.1e-0533.63Show/hide
Query:  LLTVPMLLLIVLFS-FILILCRK-----------RSAKSDGEE--------LPENLDIEA----PIFHYNGVEG-----DEQECAICLCEIEEGEKCRKM
        ++ + +L L++ F  F  I CR+           RS  +D E             LD EA    P F Y+ V+         ECA+CLCE E+ E  R M
Subjt:  LLTVPMLLLIVLFS-FILILCRK-----------RSAKSDGEE--------LPENLDIEA----PIFHYNGVEG-----DEQECAICLCEIEEGEKCRKM

Query:  KTCGHVFHKDCID
          C HVFH DC+D
Subjt:  KTCGHVFHKDCID

Q8W571 RING-H2 finger protein ATL325.0e-0639.44Show/hide
Query:  RSAKSDGEELPENLD---IEA-PIFHYNGVE-----GDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCID
        R+  +DG      LD   +E+ P+F Y+ V+       + ECAICL E+E+ E  R +  C H+FH DCID
Subjt:  RSAKSDGEELPENLD---IEA-PIFHYNGVE-----GDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCID

Q940Q4 RING-H2 finger protein ATL134.5e-0746.81Show/hide
Query:  PIFHYNGVEGDEQ---ECAICLCEIEEGEKCRKMKTCGHVFHKDCID
        P+FHY  + G +    +CA+CLCE E  +K R +  C H FH DCID
Subjt:  PIFHYNGVEGDEQ---ECAICLCEIEEGEKCRKMKTCGHVFHKDCID

Arabidopsis top hitse value%identityAlignment
AT2G17450.1 RING-H2 finger A3A4.6e-0754.05Show/hide
Query:  EGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDR
        EGD  ECAICL +  +GE+ R +  CGH FH +CID+
Subjt:  EGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDR

AT2G35000.1 RING/U-box superfamily protein7.9e-0733.63Show/hide
Query:  LLTVPMLLLIVLFS-FILILCRK-----------RSAKSDGEE--------LPENLDIEA----PIFHYNGVEG-----DEQECAICLCEIEEGEKCRKM
        ++ + +L L++ F  F  I CR+           RS  +D E             LD EA    P F Y+ V+         ECA+CLCE E+ E  R M
Subjt:  LLTVPMLLLIVLFS-FILILCRK-----------RSAKSDGEE--------LPENLDIEA----PIFHYNGVEG-----DEQECAICLCEIEEGEKCRKM

Query:  KTCGHVFHKDCID
          C HVFH DC+D
Subjt:  KTCGHVFHKDCID

AT2G47560.1 RING/U-box superfamily protein6.0e-0736.76Show/hide
Query:  RKRSAKSDGEELPENLDIEAPIFHYNGVE----GDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCID
        R  SA    + L + +  + PIF Y+        +++EC++CL E EE ++ R +  CGH FH DCID
Subjt:  RKRSAKSDGEELPENLDIEAPIFHYNGVE----GDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCID

AT4G30400.1 RING/U-box superfamily protein3.2e-0846.81Show/hide
Query:  PIFHYNGVEGDEQ---ECAICLCEIEEGEKCRKMKTCGHVFHKDCID
        P+FHY  + G +    +CA+CLCE E  +K R +  C H FH DCID
Subjt:  PIFHYNGVEGDEQ---ECAICLCEIEEGEKCRKMKTCGHVFHKDCID

AT4G40070.1 RING/U-box superfamily protein3.5e-0739.44Show/hide
Query:  RSAKSDGEELPENLD---IEA-PIFHYNGVE-----GDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCID
        R+  +DG      LD   +E+ P+F Y+ V+       + ECAICL E+E+ E  R +  C H+FH DCID
Subjt:  RSAKSDGEELPENLD---IEA-PIFHYNGVE-----GDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTGTCACCGTCGCCTATACCGTCGTTGCACTCACTGATCCTACTTCCTGGCTTCATTATGGATTTGCTAACGGTCCCCATGCTTCTTCTCATTGTGCTATTTTC
ATTCATTCTCATTTTATGTAGAAAACGATCCGCCAAATCTGACGGGGAAGAGTTGCCGGAGAATCTGGACATTGAAGCACCAATCTTTCATTACAACGGAGTTGAAGGCG
ACGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCATAAAGACTGCATTGACCGATG
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTGTCACCGTCGCCTATACCGTCGTTGCACTCACTGATCCTACTTCCTGGCTTCATTATGGATTTGCTAACGGTCCCCATGCTTCTTCTCATTGTGCTATTTTC
ATTCATTCTCATTTTATGTAGAAAACGATCCGCCAAATCTGACGGGGAAGAGTTGCCGGAGAATCTGGACATTGAAGCACCAATCTTTCATTACAACGGAGTTGAAGGCG
ACGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCATAAAGACTGCATTGACCGATG
Protein sequenceShow/hide protein sequence
MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRX