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CsaV3_7G032120 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_7G032120
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionserine-rich protein-related
Genome locationchr7:20351870..20352715
RNA-Seq ExpressionCsaV3_7G032120
SyntenyCsaV3_7G032120
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058731.1 uncharacterized protein E6C27_scaffold339G002010 [Cucumis melo var. makuwa]1.2e-4185.85Show/hide
Query:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD
        M NKTASSSRLCLCAPTTHPGSFRCSLHRR SNSSHKTP PLPP  P GSQSKAA TTTDH+ LKAFLMQIVKPSSH LQRRG+F+PKPSRFC++VSA D
Subjt:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD

Query:  PRLAVS
        PRLAVS
Subjt:  PRLAVS

KAG6593379.1 hypothetical protein SDJN03_12855, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2768.87Show/hide
Query:  MPNKTA-SSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD
        M NKTA SS RLCLCAPTTHPGSFRCSLHRR+  +S+K PPLPPP   G+QSKA + T    L+KAFLMQ++KPSS DLQRR +F+PKPSRFC+  +ASD
Subjt:  MPNKTA-SSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD

Query:  PRLAVS
          LAVS
Subjt:  PRLAVS

KAG7025727.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2668.27Show/hide
Query:  MPNKTA-SSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD
        M NKTA SS RLCLCAPTTHPGSFRCSLHRR+  +S+K PPLPPP   G+QSKA + T    L+KAFLMQ++KPSS DLQRR +F+PKPSRFC+  +ASD
Subjt:  MPNKTA-SSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD

Query:  PRLA
          LA
Subjt:  PRLA

KGN45240.1 hypothetical protein Csa_016736 [Cucumis sativus]3.3e-52100Show/hide
Query:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDP
        MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDP
Subjt:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDP

Query:  RLAVS
        RLAVS
Subjt:  RLAVS

XP_008461151.1 PREDICTED: uncharacterized protein LOC103499822 [Cucumis melo]1.4e-4286.79Show/hide
Query:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD
        MPNKTASSSRLCLCAPTTHPGSFRCSLHRR SNSSHKTP PLPP  P GSQSKAA TTTDH+ LKAFLMQIVKPSSH LQRRG+F+PKPSRFC++VSA D
Subjt:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD

Query:  PRLAVS
        PRLAVS
Subjt:  PRLAVS

TrEMBL top hitse value%identityAlignment
A0A061G8R4 Uncharacterized protein3.7e-1753.06Show/hide
Query:  SSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAA-----ATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD
        SS+R CLC+PTTHPGSFRCS HR    +S K+     P     +SKAA      T +   L+KAFLMQI+KPSSHDLQRR +F+ KP+RFC + S+++
Subjt:  SSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAA-----ATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD

A0A0A0K698 Uncharacterized protein1.6e-52100Show/hide
Query:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDP
        MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDP
Subjt:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDP

Query:  RLAVS
        RLAVS
Subjt:  RLAVS

A0A1S3CEH6 uncharacterized protein LOC1034998226.7e-4386.79Show/hide
Query:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD
        MPNKTASSSRLCLCAPTTHPGSFRCSLHRR SNSSHKTP PLPP  P GSQSKAA TTTDH+ LKAFLMQIVKPSSH LQRRG+F+PKPSRFC++VSA D
Subjt:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD

Query:  PRLAVS
        PRLAVS
Subjt:  PRLAVS

A0A5A7UZ19 Uncharacterized protein5.7e-4285.85Show/hide
Query:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD
        M NKTASSSRLCLCAPTTHPGSFRCSLHRR SNSSHKTP PLPP  P GSQSKAA TTTDH+ LKAFLMQIVKPSSH LQRRG+F+PKPSRFC++VSA D
Subjt:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASD

Query:  PRLAVS
        PRLAVS
Subjt:  PRLAVS

A0A6J1DD51 uncharacterized protein LOC1110193812.1e-2059.62Show/hide
Query:  TASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHH---LLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDPR
        +AS+SRLCLCAPTTHPGSFRCSLHRR   +S K           S++ AA+   D +   L+KAFLMQI+KPSSHDLQRR +F+PKPSRFC+V S     
Subjt:  TASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHH---LLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDPR

Query:  LAVS
        LAVS
Subjt:  LAVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67910.1 unknown protein3.2e-0543.64Show/hide
Query:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHK---------TPPLPPPSP
        +  +T+ +   CLC+PTTHPGSFRC +HR LS    K         +PP P  SP
Subjt:  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHK---------TPPLPPPSP

AT5G11090.1 serine-rich protein-related2.7e-1234.62Show/hide
Query:  PNKTASSSRLCLCAPTTHPGSFRCSLHRRLSN------SSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVV
        P+     SR C+C+PTTHPGSFRCSLH+ ++N      +S+ T  L       + S       +   ++  L  +++PSSH L+RR +++P+PSR   + 
Subjt:  PNKTASSSRLCLCAPTTHPGSFRCSLHRRLSN------SSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVV

Query:  SASD
         A +
Subjt:  SASD

AT5G20370.1 serine-rich protein-related1.2e-0734.62Show/hide
Query:  SSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLM--------------------QIVKPSSHDLQRRGSFEPK
        + R CLC+PTTHPGSFRCS HRRL +   KT                      +L K  LM                     + KPSS    RR  F P+
Subjt:  SSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLM--------------------QIVKPSSHDLQRRGSFEPK

Query:  PSRF
         SRF
Subjt:  PSRF

AT5G25280.1 serine-rich protein-related9.3e-1336.89Show/hide
Query:  NKTASSSRLCLCAPTTHPGSFRCSLHRRLSN------SSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVS
        +K   S R C+C+PTTHPGSFRCSLH+ ++N      +S+ T  L       + S       +   ++  L  +++PSSH L+RR ++EP+ SR  S+  
Subjt:  NKTASSSRLCLCAPTTHPGSFRCSLHRRLSN------SSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVS

Query:  ASD
        A D
Subjt:  ASD

AT5G25280.2 serine-rich protein-related9.3e-1336.89Show/hide
Query:  NKTASSSRLCLCAPTTHPGSFRCSLHRRLSN------SSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVS
        +K   S R C+C+PTTHPGSFRCSLH+ ++N      +S+ T  L       + S       +   ++  L  +++PSSH L+RR ++EP+ SR  S+  
Subjt:  NKTASSSRLCLCAPTTHPGSFRCSLHRRLSN------SSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVS

Query:  ASD
        A D
Subjt:  ASD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAACAAAACCGCTTCCTCTTCCCGCCTCTGCCTCTGTGCTCCCACCACCCATCCCGGCTCTTTCCGCTGCAGCCTCCACCGTCGTCTTTCGAATTCCTCCCACAA
AACCCCGCCGCTGCCGCCTCCTTCTCCGCGTGGAAGCCAGTCGAAGGCGGCAGCGACGACGACGGATCATCATTTGCTTAAGGCGTTTCTGATGCAGATCGTAAAGCCGT
CGAGTCATGATCTTCAAAGACGGGGAAGTTTCGAGCCTAAACCTTCTCGATTCTGCAGTGTCGTCTCTGCTTCGGATCCTCGTTTGGCTGTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGAACAAAACCGCTTCCTCTTCCCGCCTCTGCCTCTGTGCTCCCACCACCCATCCCGGCTCTTTCCGCTGCAGCCTCCACCGTCGTCTTTCGAATTCCTCCCACAA
AACCCCGCCGCTGCCGCCTCCTTCTCCGCGTGGAAGCCAGTCGAAGGCGGCAGCGACGACGACGGATCATCATTTGCTTAAGGCGTTTCTGATGCAGATCGTAAAGCCGT
CGAGTCATGATCTTCAAAGACGGGGAAGTTTCGAGCCTAAACCTTCTCGATTCTGCAGTGTCGTCTCTGCTTCGGATCCTCGTTTGGCTGTTTCTTGA
Protein sequenceShow/hide protein sequence
MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTDHHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDPRLAVS