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CsaV3_7G032140 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_7G032140
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At4g02750-like
Genome locationchr7:20353754..20354038
RNA-Seq ExpressionCsaV3_7G032140
SyntenyCsaV3_7G032140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45241.1 hypothetical protein Csa_016465 [Cucumis sativus]3.1e-49100Show/hide
Query:  MDKPSVRMLRSNCLVSCFRIEDFPPPFLHVHPLALLKAWGTNSCVDIQSSLNSCLSVCNALITMYFKCGSQEGISVFDQSRHNYLESSFSWLCT
        MDKPSVRMLRSNCLVSCFRIEDFPPPFLHVHPLALLKAWGTNSCVDIQSSLNSCLSVCNALITMYFKCGSQEGISVFDQSRHNYLESSFSWLCT
Subjt:  MDKPSVRMLRSNCLVSCFRIEDFPPPFLHVHPLALLKAWGTNSCVDIQSSLNSCLSVCNALITMYFKCGSQEGISVFDQSRHNYLESSFSWLCT
XP_022148556.1 pentatricopeptide repeat-containing protein At4g02750-like [Momordica charantia]8.7e-0482.76Show/hide
Query:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
        LNSCL VCNALITMYFKCGS EG+SVF +
Subjt:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
XP_023004730.1 pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima]6.7e-0482.76Show/hide
Query:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
        LNSCL VCNA+ITMYFKCGS EGISVF++
Subjt:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
TrEMBL top hitse value%identityAlignment
A0A0A0KBR5 Uncharacterized protein1.5e-49100Show/hide
Query:  MDKPSVRMLRSNCLVSCFRIEDFPPPFLHVHPLALLKAWGTNSCVDIQSSLNSCLSVCNALITMYFKCGSQEGISVFDQSRHNYLESSFSWLCT
        MDKPSVRMLRSNCLVSCFRIEDFPPPFLHVHPLALLKAWGTNSCVDIQSSLNSCLSVCNALITMYFKCGSQEGISVFDQSRHNYLESSFSWLCT
Subjt:  MDKPSVRMLRSNCLVSCFRIEDFPPPFLHVHPLALLKAWGTNSCVDIQSSLNSCLSVCNALITMYFKCGSQEGISVFDQSRHNYLESSFSWLCT
A0A5N6QFX9 DYW_deaminase domain-containing protein5.5e-0475.86Show/hide
Query:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
        +NSCLSVCNALITMYFKCGS +G+ VF++
Subjt:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
A0A6J1D5R5 pentatricopeptide repeat-containing protein At4g02750-like4.2e-0482.76Show/hide
Query:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
        LNSCL VCNALITMYFKCGS EG+SVF +
Subjt:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
A0A6J1HAB1 pentatricopeptide repeat-containing protein At4g02750-like5.5e-0482.76Show/hide
Query:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
        LNSCL VCNA+ITMYFKCGS EGISVF +
Subjt:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
A0A6J1KVF3 pentatricopeptide repeat-containing protein At4g02750-like3.2e-0482.76Show/hide
Query:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
        LNSCL VCNA+ITMYFKCGS EGISVF++
Subjt:  LNSCLSVCNALITMYFKCGSQEGISVFDQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGCCAAGTGTGAGGATGTTGCGTTCAAATTGTTTGGTGTCATGCTTTCGAATCGAAGATTTCCCCCCTCCTTTTCTGCATGTGCATCCCTTGGCACTACTAAA
AGCTTGGGGAACAAATTCATGCGTTGACATACAAAGTTCACTCAATTCTTGTCTATCTGTATGTAATGCTCTGATAACAATGTATTTCAAATGTGGCAGTCAAGAAGGCA
TTTCTGTGTTCGATCAGTCGAGACATAATTACCTGGAAAGCAGTTTTAGTTGGCTGTGCACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGCCAAGTGTGAGGATGTTGCGTTCAAATTGTTTGGTGTCATGCTTTCGAATCGAAGATTTCCCCCCTCCTTTTCTGCATGTGCATCCCTTGGCACTACTAAA
AGCTTGGGGAACAAATTCATGCGTTGACATACAAAGTTCACTCAATTCTTGTCTATCTGTATGTAATGCTCTGATAACAATGTATTTCAAATGTGGCAGTCAAGAAGGCA
TTTCTGTGTTCGATCAGTCGAGACATAATTACCTGGAAAGCAGTTTTAGTTGGCTGTGCACATAA
Protein sequenceShow/hide protein sequence
MDKPSVRMLRSNCLVSCFRIEDFPPPFLHVHPLALLKAWGTNSCVDIQSSLNSCLSVCNALITMYFKCGSQEGISVFDQSRHNYLESSFSWLCT