; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsaV3_UNG044290 (gene) of Cucumber (Chinese Long) v3 genome

Gene IDCsaV3_UNG044290
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptioncondensin-2 complex subunit D3
Genome locationscaffold31:582987..585532
RNA-Seq ExpressionCsaV3_UNG044290
SyntenyCsaV3_UNG044290
Gene Ontology termsGO:0007076 - mitotic chromosome condensation (biological process)
GO:0009556 - microsporogenesis (biological process)
GO:0010032 - meiotic chromosome condensation (biological process)
GO:0098653 - centromere clustering (biological process)
GO:0000779 - condensed chromosome, centromeric region (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0042393 - histone binding (molecular function)
InterPro domainsIPR016024 - Armadillo-type fold
IPR026971 - Condensin subunit 1/Condensin-2 complex subunit D3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637200.1 hypothetical protein CSA_019088 [Cucumis sativus]9.3e-6138.63Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------
        MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF             
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

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Query:  -------------------------------------------------------------------------------------------FNEMQKSTN
                                                                                                    NEMQKSTN
Subjt:  -------------------------------------------------------------------------------------------FNEMQKSTN

Query:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
Subjt:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
KAE8637378.1 hypothetical protein CSA_004471 [Cucumis sativus]4.3e-98100Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADFFNEMQKSTNYLSP
        MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADFFNEMQKSTNYLSP
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADFFNEMQKSTNYLSP

Query:  EAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        EAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
Subjt:  EAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
XP_008458433.1 PREDICTED: condensin-2 complex subunit D3 [Cucumis melo]6.6e-5937.63Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------
        MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNL+ITMADF             
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
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Query:  -------------------------------------------------------------------------------------------FNEMQKSTN
                                                                                                    NEM KSTN
Subjt:  -------------------------------------------------------------------------------------------FNEMQKSTN

Query:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        YLSPEAPPQA S++NNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
Subjt:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
XP_023547430.1 condensin-2 complex subunit D3 [Cucurbita pepo subsp. pepo]3.1e-4833.6Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------
        +TTI+PLLHTIITSGNRD KSNKLPIQT S+KETAPSLY+QAWLTMGKICL DEKRAKSYIPLFVQEL NSDC+ALRNNL+ITMADF             
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
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Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------------------------------------------------FNEMQKSTN
                                                                                                    NEMQKSTN
Subjt:  -------------------------------------------------------------------------------------------FNEMQKSTN

Query:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        YLSPEAPP   + +N LTSKLQ DS+VASAIAD AAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRT GNNG NTSRLNVIES+RK QSF+SDEEN
Subjt:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
XP_038874590.1 condensin-2 complex subunit D3 isoform X1 [Benincasa hispida]1.6e-4934.41Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------
        MTTI+PLLHTIITSGNRD KSNKLPIQTASLKETAPSLY+QAWLTMGKICL DEKRAKSYIPLFVQELGNSDC+ALRNNL+ITMADF             
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------------------------------------------------FNEMQKSTN
                                                                                                    NEMQKSTN
Subjt:  -------------------------------------------------------------------------------------------FNEMQKSTN

Query:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        +LSPEAP +A S +N +TSKLQNDSKVASAIADAAAAATAKSVLREVNRG STPP GSLSLP LKS TGGNNGTN+S LNVIESLRK QSFESDEEN
Subjt:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
TrEMBL top hitse value%identityAlignment
A0A1R3JUF3 Armadillo-type1.4e-3032.11Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADFF------------
        ++ IVPLL+TIITSGN D K NKLP    SLK+TAPSLYIQAWLTMGKICL D K AKSYIPLFVQEL  SDC+ALRNNL++ MADF             
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADFF------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------NEM-------------------------------------QKSTNYLSPEAPPQA--VSVL
                                               NE+                                     Q  + Y SP     A    V 
Subjt:  ---------------------------------------NEM-------------------------------------QKSTNYLSPEAPPQA--VSVL

Query:  NNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        + L  KLQ++SKVASA+ADAAA ATA+SVLREVN+G    PL S+S+PKLKS   G +  N   L+V+ES+R+ QSF SD+EN
Subjt:  NNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
A0A1S3C933 condensin-2 complex subunit D33.2e-5937.63Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------
        MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNL+ITMADF             
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------------------------------------------------FNEMQKSTN
                                                                                                    NEM KSTN
Subjt:  -------------------------------------------------------------------------------------------FNEMQKSTN

Query:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        YLSPEAPPQA S++NNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
Subjt:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
A0A6J1CAM9 condensin-2 complex subunit D31.0e-4131.46Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------
        MTTI+PLLHTIITSGNRD KSNKLPIQT SLKE APSLY+QAWLTMGKICL DEKRAKSYIPLFVQELGNSDC+ALRNNL+I M+DF             
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
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Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------FNEMQKS
                                                                                                      NEMQKS
Subjt:  ---------------------------------------------------------------------------------------------FNEMQKS

Query:  TNYLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        T+YLSPE PP A S +N L  KL+ DSKVASAIADAAAAATA++VL EVN+G  TPPL SLSLPKLKSRTGGNN  N   L+VIESLRK QSFESDEEN
Subjt:  TNYLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
A0A6J1H4Z7 condensin-2 complex subunit D32.8e-4733Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------
        +TTI+PLLHTIITSGNRD KSNKLPIQT S+KETAPSLY+QAWLTMGKICL DEK AKSYIPLF+QEL NSDC+ALRNNL+ITMADF             
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------------------------------------------------FNEMQKSTN
                                                                                                    NEMQKSTN
Subjt:  -------------------------------------------------------------------------------------------FNEMQKSTN

Query:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        Y+SPEAPP   + ++ LTSKLQ DS+VASAIAD AAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNG NTSRLNVIES+RK QSF+SDEEN
Subjt:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
A0A6J1L4I0 condensin-2 complex subunit D34.1e-4632.6Show/hide
Query:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------
        +TTI+PLLHT+ITSGNRD KSNKLPIQT S++ETAPSLY+QAWLTMGKICL DEK AKSYIPLFVQEL NSDC+ALRNNL+ITMADF             
Subjt:  MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------------------------------------------------FNEMQKSTN
                                                                                                    NEMQKS N
Subjt:  -------------------------------------------------------------------------------------------FNEMQKSTN

Query:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        YLSPEAPP   + +N LTSKLQ DS+VASAIAD  AAATAKSVLREVNRGTSTPPLGSLSLPKLKS TGGNNG NTSRLNVIES+RK QSF+SDEEN
Subjt:  YLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
SwissProt top hitse value%identityAlignment
P42695 Condensin-2 complex subunit D38.3e-0435.44Show/hide
Query:  HTIITSGNRDLKSNKLPIQTASLKETAPS-LYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMAD
        H+  + G+ +  +++ P Q        PS +   A +T+GK+CL  E  AK  IP  V+EL   +  A+RNN+II M D
Subjt:  HTIITSGNRDLKSNKLPIQTASLKETAPS-LYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMAD
Q6ZQK0 Condensin-2 complex subunit D31.7e-0437.97Show/hide
Query:  HTIITSGNRDLKSNKLPIQTASLKETAPS-LYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMAD
        H   + G  D   ++ P Q  S     PS +   A +T+GK+CL  E  AK  IP  V+EL  S+  A+RNN+II + D
Subjt:  HTIITSGNRDLKSNKLPIQTASLKETAPS-LYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMAD
Arabidopsis top hitse value%identityAlignment
AT4G15890.1 binding3.9e-2563.22Show/hide
Query:  TTIVPLLHTIITSGNRDLK-SNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF
        T IVP LHT+ITSGN D K  NKLP     LK+ AP LY Q+WLTM K+CL D K AK Y+PLF QEL  SDC+ALRNNL++ M DF
Subjt:  TTIVPLLHTIITSGNRDLK-SNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADF
AT4G15890.1 binding2.1e-1044.44Show/hide
Query:  TNYLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN
        T++ + E    A S  N   S L  +S+V SA AD  AA  A+SVLREVN G +TPPL ++S+PKL+S  G +     S  +V+ESLR+  +F SD+E+
Subjt:  TNYLSPEAPPQAVSVLNNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACCATAGTACCACTTCTCCACACCATTATTACTTCTGGAAACCGTGATCTCAAATCTAATAAACTACCAATTCAAACCGCATCTCTGAAGGAAACTGCTCCTTC
TTTATACATTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTACTGATGAGAAGCGAGCAAAGAGTTACATTCCTCTATTTGTACAGGAGCTTGGAAATAGTGATTGTT
CAGCGCTTCGCAACAATCTTATTATCACAATGGCAGATTTTTTCAACGAGATGCAAAAGTCAACTAACTATCTTTCTCCTGAGGCTCCTCCTCAAGCTGTAAGTGTTCTT
AACAACCTAACCTCAAAACTTCAAAATGATTCGAAAGTTGCTTCAGCCATTGCTGATGCAGCTGCTGCAGCCACAGCAAAATCTGTGCTTAGAGAAGTGAACAGAGGGAC
TTCGACACCGCCTCTCGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAACAATGGCACAAATACTTCACGTTTGAATGTGATTGAATCTTTGAGAAAAC
ACCAGTCTTTTGAGTCTGATGAAGAAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACCATAGTACCACTTCTCCACACCATTATTACTTCTGGAAACCGTGATCTCAAATCTAATAAACTACCAATTCAAACCGCATCTCTGAAGGAAACTGCTCCTTC
TTTATACATTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTACTGATGAGAAGCGAGCAAAGAGTTACATTCCTCTATTTGTACAGGAGCTTGGAAATAGTGATTGTT
CAGCGCTTCGCAACAATCTTATTATCACAATGGCAGATTTTTTCAACGAGATGCAAAAGTCAACTAACTATCTTTCTCCTGAGGCTCCTCCTCAAGCTGTAAGTGTTCTT
AACAACCTAACCTCAAAACTTCAAAATGATTCGAAAGTTGCTTCAGCCATTGCTGATGCAGCTGCTGCAGCCACAGCAAAATCTGTGCTTAGAGAAGTGAACAGAGGGAC
TTCGACACCGCCTCTCGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAACAATGGCACAAATACTTCACGTTTGAATGTGATTGAATCTTTGAGAAAAC
ACCAGTCTTTTGAGTCTGATGAAGAAAACTAA
Protein sequenceShow/hide protein sequence
MTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQELGNSDCSALRNNLIITMADFFNEMQKSTNYLSPEAPPQAVSVL
NNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQSFESDEEN