; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Csor.00g005170 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g005170
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description60S ribosomal protein L44
Genome locationCsor_Chr08:2964890..2966089
RNA-Seq ExpressionCsor.00g005170
SyntenyCsor.00g005170
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4385822.1 hypothetical protein F8388_010378 [Cannabis sativa]3.98e-70100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

VFQ58982.1 unnamed protein product [Cuscuta campestris]4.69e-7099.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKT+CKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

XP_003593138.1 60S ribosomal protein L44 [Medicago truncatula]2.32e-7099.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

XP_019152128.1 PREDICTED: 60S ribosomal protein L44-like isoform X1 [Ipomoea nil]1.15e-70100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

XP_019187758.1 PREDICTED: 60S ribosomal protein L44 [Ipomoea nil]3.30e-7099.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

TrEMBL top hitse value%identityAlignment
A0A2K3MQ78 60S ribosomal protein l44-like1.12e-7099.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A6J1GQU0 60S ribosomal protein L445.57e-71100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A6J1KSV1 60S ribosomal protein L445.57e-71100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

G7L0P4 60S ribosomal protein L36a1.12e-7099.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

I3S6Y0 Uncharacterized protein1.12e-7099.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

SwissProt top hitse value%identityAlignment
A8PCG3 60S ribosomal protein L441.9e-4277.88Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK K
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G +L
Subjt:  GTSL

O23290 60S ribosomal protein L36a1.3e-5193.33Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

O59870 60S ribosomal protein L446.4e-4378.85Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK K
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G ++
Subjt:  GTSL

Q96499 60S ribosomal protein L441.6e-5498.1Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

Q9UWE4 60S ribosomal protein L441.9e-4277.88Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK K
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G +L
Subjt:  GTSL

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein9.1e-5393.33Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein9.1e-5393.33Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein1.8e-4592.47Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGGCAAGGATAGTCTTGCTGC
CCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGAGGCCAGACCAAGCCTGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGATTGTGCTGAGGTTGCAAT
GCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGAGGAGACAAGAAGGGAAAGGGAACTTCACTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGGCAAGGATAGTCTTGCTGC
CCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGAGGCCAGACCAAGCCTGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGATTGTGCTGAGGTTGCAAT
GCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGAGGAGACAAGAAGGGAAAGGGAACTTCACTTTTTTAG
Protein sequenceShow/hide protein sequence
MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF