; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Csor.00g008980 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g008980
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionprotein PRD1
Genome locationCsor_Chr08:538247..539030
RNA-Seq ExpressionCsor.00g008980
SyntenyCsor.00g008980
Gene Ontology termsGO:0042138 - meiotic DNA double-strand break formation (biological process)
InterPro domainsIPR044968 - Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592895.1 Protein putative RECOMBINATION INITIATION DEFECT 1, partial [Cucurbita argyrosperma subsp. sororia]1.18e-87100Show/hide
Query:  MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNF
        MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNF
Subjt:  MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNF

Query:  IAGVLDRLSYAVLAWSPRQVYMVPNVR
        IAGVLDRLSYAVLAWSPRQVYMVPNVR
Subjt:  IAGVLDRLSYAVLAWSPRQVYMVPNVR

KAG7025297.1 Protein PRD1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.55e-86100Show/hide
Query:  MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNF
        MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNF
Subjt:  MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNF

Query:  IAGVLDRLSYAVLAWSPRQVYMVPNVR
        IAGVLDRLSYAVLAWSPRQVYMVPNVR
Subjt:  IAGVLDRLSYAVLAWSPRQVYMVPNVR

XP_022992066.1 protein PRD1 [Cucurbita maxima]6.48e-3660.5Show/hide
Query:  EEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGV
        +E G+ICLLCFSNLISDP S         S      SQ P LRTFL+FHSHF+V  F+  L S+DDDP+A Q+T LV +LCDV+EADGDGS+CD+F+A V
Subjt:  EEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGV

Query:  LDRLSYAVLAWSPRQVYMV
         DRLS   LAWS RQVYM+
Subjt:  LDRLSYAVLAWSPRQVYMV

XP_023547735.1 protein PRD1 [Cucurbita pepo subsp. pepo]6.48e-3660.5Show/hide
Query:  EEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGV
        +E G+ICLLCFSNLISDP S         S      SQ P LRTFL+FHSHF+V  F+  L S+DDDP+A Q+T LV +LCDV+EADGDGS+CD+F+A V
Subjt:  EEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGV

Query:  LDRLSYAVLAWSPRQVYMV
         DRLS   LAWS RQVYM+
Subjt:  LDRLSYAVLAWSPRQVYMV

XP_038884337.1 LOW QUALITY PROTEIN: protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like [Benincasa hispida]5.42e-3761.72Show/hide
Query:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS
        HR +     +E GTICLLCFSNLISDP S     S +L  FSQ     P L+TFLTFHSH IV  F+A L S+DDD IA QVT LV  LCD+TE DGDGS
Subjt:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS

Query:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
        +CD+FIA V DRLS   LAWS RQVYM+
Subjt:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV

TrEMBL top hitse value%identityAlignment
A0A6J1D8C7 protein PRD1 isoform X11.30e-3458.59Show/hide
Query:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS
        HR +     +E GTICLLCFSNLISDP S     S +L   SQ     P LRTFLTFHSHFIV  F+A L  +DD+PIA Q+T LV +LCD + ADGDGS
Subjt:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS

Query:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
        + ++FIA V DRLS   LAWS RQVYM+
Subjt:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV

A0A6J1DAL8 protein PRD1 isoform X31.29e-3458.59Show/hide
Query:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS
        HR +     +E GTICLLCFSNLISDP S     S +L   SQ     P LRTFLTFHSHFIV  F+A L  +DD+PIA Q+T LV +LCD + ADGDGS
Subjt:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS

Query:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
        + ++FIA V DRLS   LAWS RQVYM+
Subjt:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV

A0A6J1DBD4 protein PRD1 isoform X21.30e-3458.59Show/hide
Query:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS
        HR +     +E GTICLLCFSNLISDP S     S +L   SQ     P LRTFLTFHSHFIV  F+A L  +DD+PIA Q+T LV +LCD + ADGDGS
Subjt:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS

Query:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
        + ++FIA V DRLS   LAWS RQVYM+
Subjt:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV

A0A6J1ET85 protein PRD12.76e-3559.66Show/hide
Query:  EEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGV
        +E G+ICLLCFSNLISDP S         S      SQ P LRTFL+FHSHF+V  F+  L S+DD P+A Q+T LV +LCDV+EADGDGS+CD+F+A V
Subjt:  EEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGV

Query:  LDRLSYAVLAWSPRQVYMV
         DRLS   LAWS RQVYM+
Subjt:  LDRLSYAVLAWSPRQVYMV

A0A6J1JSI6 protein PRD13.14e-3660.5Show/hide
Query:  EEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGV
        +E G+ICLLCFSNLISDP S         S      SQ P LRTFL+FHSHF+V  F+  L S+DDDP+A Q+T LV +LCDV+EADGDGS+CD+F+A V
Subjt:  EEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGV

Query:  LDRLSYAVLAWSPRQVYMV
         DRLS   LAWS RQVYM+
Subjt:  LDRLSYAVLAWSPRQVYMV

SwissProt top hitse value%identityAlignment
O23277 Protein PUTATIVE RECOMBINATION INITIATION DEFECT 17.3e-1738.17Show/hide
Query:  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADG
        A  HR   + R ++ GT CL+CFSNL+SDP        ++   L +    P+ LRT L+ H HF+V   +  L S DD PIA Q+  ++  LC V E+  
Subjt:  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADG

Query:  DGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
          SI ++F+  + D+LS   L WS RQ++M+
Subjt:  DGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

Arabidopsis top hitse value%identityAlignment
AT4G14180.1 putative recombination initiation defect 15.2e-1838.17Show/hide
Query:  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADG
        A  HR   + R ++ GT CL+CFSNL+SDP        ++   L +    P+ LRT L+ H HF+V   +  L S DD PIA Q+  ++  LC V E+  
Subjt:  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADG

Query:  DGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
          SI ++F+  + D+LS   L WS RQ++M+
Subjt:  DGSICDNFIAGVLDRLSYAVLAWSPRQVYMV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCTTTCATCGCTTTGCCTTCACACACAGGAAGGAGGAAGTAGGAACGATTTGCCTTCTCTGCTTCTCCAACCTCATCTCCGATCCCTTCTCTTCCAGTTCTCT
CGGGCTTTTTTCTCAGCTTCCATTACTCCGCACCTTCCTCACCTTCCACTCTCACTTTATCGTCCCTTCCTTCATCGCCGTGCTCTTCTCCTACGACGATGATCCCATTG
CTTGCCAAGTCACCGGTCTTGTTCACAAGCTCTGTGATGTGACTGAAGCTGACGGTGATGGATCCATTTGCGATAATTTCATTGCCGGAGTTTTGGATCGGCTTTCTTAT
GCCGTGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGTACCAAATGTACGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCTTTCATCGCTTTGCCTTCACACACAGGAAGGAGGAAGTAGGAACGATTTGCCTTCTCTGCTTCTCCAACCTCATCTCCGATCCCTTCTCTTCCAGTTCTCT
CGGGCTTTTTTCTCAGCTTCCATTACTCCGCACCTTCCTCACCTTCCACTCTCACTTTATCGTCCCTTCCTTCATCGCCGTGCTCTTCTCCTACGACGATGATCCCATTG
CTTGCCAAGTCACCGGTCTTGTTCACAAGCTCTGTGATGTGACTGAAGCTGACGGTGATGGATCCATTTGCGATAATTTCATTGCCGGAGTTTTGGATCGGCTTTCTTAT
GCCGTGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGTACCAAATGTACGATAA
Protein sequenceShow/hide protein sequence
MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSY
AVLAWSPRQVYMVPNVR