CuGenDBv2

Gene ID	Csor.00g010980
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	NusB domain-containing protein
Genome location	Csor_Chr02:5188996..5192301
RNA-Seq Expression	Csor.00g010980
Synteny	Csor.00g010980
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0031564 - transcription antitermination (biological process) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR006027 - NusB/RsmB/TIM44 IPR011605 - NusB antitermination factor IPR035926 - NusB-like superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605513.1 hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sororia]

6.90e-209

100

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

TYK21741.1 NusB/RsmB/TIM44 [Cucumis melo var. makuwa]

1.93e-164

84.21

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Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

XP_022948088.1 uncharacterized protein LOC111451776 [Cucurbita moschata]

1.63e-207

99.34

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

XP_023007062.1 uncharacterized protein LOC111499665 [Cucurbita maxima]

3.14e-205

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

XP_023532267.1 uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo]

7.72e-206

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSS VSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAE+LAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILEL ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BNR2 uncharacterized protein LOC103491638 isoform X1

3.45e-164

84.21

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Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

A0A1S4DXQ5 uncharacterized protein LOC103491638 isoform X2

6.24e-162

84.53

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Query:  PNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVR
        PNFHFS+ +SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CLEGSDPVR
Subjt:  PNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVR

Query:  LFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPS
        LFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LKI+KVIP 
Subjt:  LFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPS

Query:  TWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  TWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

A0A5D3DDJ4 NusB/RsmB/TIM44

9.34e-165

84.21

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Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

A0A6J1G8E0 uncharacterized protein LOC111451776

7.87e-208

99.34

Show/hide

Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

A0A6J1KXJ4 uncharacterized protein LOC111499665

1.52e-205

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

SwissProt top hits

e value

%identity

Alignment

A7GWZ7 Transcription antitermination protein NusB

1.8e-05

35.37

Show/hide

Query:  VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
        +  ++ +D+  LK   +D+++    K+K   R  I+EL IL L + E+   GT   ++INEA++LAK     +AP+ ING L
Subjt:  VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL

B1WXY6 Transcription antitermination protein NusB

5.2e-05

38.67

Show/hide

Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQ
        +ID+ + +  KD    R+  ++  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F   I+
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQ

Q18B61 Transcription antitermination protein NusB

3.6e-06

39.19

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Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
        KID++I    K+    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P+ ING L + V +I
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI

Q5N1J7 Transcription antitermination protein NusB

2.3e-05

42.65

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Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Q8GIR7 Transcription antitermination protein NusB

2.3e-05

42.65

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Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Arabidopsis top hits

e value

%identity

Alignment

AT4G26370.1 antitermination NusB domain-containing protein

5.4e-90

68.03

Show/hide

Query:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV
        +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGSDP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  
Subjt:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV

Query:  ETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINE
        ET EE DEL+R DEK+S IEAE+L+APPK+VYSKL+LRF +KLL AVVD+WDSHV+ I+K+ P  WK  PAGRILE  ILHLAMSE+ V+ TRH IVINE
Subjt:  ETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINE

Query:  AVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVKEVVS
        AVDLAKRFCDG+APRIINGCLRTFVKD   T +  A  +K+ VS
Subjt:  AVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVKEVVS

AT4G26370.2 antitermination NusB domain-containing protein

1.4e-37

62.9

Show/hide

Query:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV
        +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGSDP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  
Subjt:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV

Query:  ETAEEADELLRKDEKDSAIEAEIL
        ET EE DEL+R DEK+S I   ++
Subjt:  ETAEEADELLRKDEKDSAIEAEIL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGAACTGGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCCCGTTTCTGGAATATGCCGT
TTCCCATTCCCCACTAGTGCCATTGTTCCCTATGTAAAAGAATCCGTGCCACGCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCT
GTGGGTAAAGAGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCT
TTGTCAATTATTTATGCATCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCTGGATATGAATTTGACAAGACA
TCATTGATGGAATACAACCATATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCA
ATCGAGGCAGAAATCCTTGCGGCTCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGT
CACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACG
GTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAACGATTCTGCGATGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACC
TTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGA

mRNA sequence

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Protein sequence

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MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELA
LSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS
HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVST

Csor.00g010980 (gene) of Silver-seed gourd (wild; sororia) v1 genome