CuGenDBv2

Gene ID	Csor.00g011990
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ribosomal protein S18
Genome location	Csor_Chr02:4646996..4653556
RNA-Seq Expression	Csor.00g011990
Synteny	Csor.00g011990
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001648 - Ribosomal protein S18 IPR036870 - Ribosomal protein S18 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605412.1 hypothetical protein SDJN03_02729, partial [Cucurbita argyrosperma subsp. sororia]

5.02e-148

100

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNTFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKTGISAKAQRKVAKAQRLNAFHNNGNQI
        IEDNLNTLSDGMDDNTFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKTGISAKAQRKVAKAQRLNAFHNNGNQI
Subjt:  IEDNLNTLSDGMDDNTFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKTGISAKAQRKVAKAQRLNAFHNNGNQI

Query:  ICFWEDHGVSR
        ICFWEDHGVSR
Subjt:  ICFWEDHGVSR

XP_022947026.1 uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata]

2.55e-111

82.03

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNVQVAFRTIGGGITRKFKQPSALR+LSTNAARDCS DDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN
        IEDNLNTLSDGMD         FEF                         I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGIIN
Subjt:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN

Query:  KRSKTGISAKAQRKVAK
        KRSKTGISAKAQRKVA+
Subjt:  KRSKTGISAKAQRKVAK

XP_022947027.1 uncharacterized protein LOC111451027 isoform X2 [Cucurbita moschata]

8.92e-104

80.19

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNVQVAFRTIGGGITRKFKQPSALR+LSTNAARDCS DDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN
        IEDNLNTLSDGMD         FEF                         I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGIIN
Subjt:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN

Query:  KRSKTGI
        KRSK  +
Subjt:  KRSKTGI

XP_022986919.1 uncharacterized protein LOC111484513 [Cucurbita maxima]

5.54e-98

73.73

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        M  VQVA RT+GGG++R+FKQPS LR+LSTNAARD   DD+GK +SFESADDFERRIFGGVS GDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN
        ++DNLNTLSDGMD         FEF                         I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGII 
Subjt:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN

Query:  KRSKTGISAKAQRKVAK
        KRSKT ISAKAQRKVA+
Subjt:  KRSKTGISAKAQRKVAK

XP_023007407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 [Cucurbita maxima]

5.33e-103

78.8

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNV   FRTIGGGITRKFKQPSALR+LSTNAARDCS DDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN
        IEDNLNTLSDGMD         FEF                         I+DLDLTKPGVRK PKRVEF V TEEVLR ADFRNVRF+ANFITDAGIIN
Subjt:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN

Query:  KRSKTGISAKAQRKVAK
        KRSKTGISAKAQRKVA+
Subjt:  KRSKTGISAKAQRKVAK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FYC1 uncharacterized protein LOC111448465

2.68e-98

72.81

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MR VQVA RT+GGG++R+FKQPS LR+LSTNAARD   DD+GK +SFESADDFERRIFGGVS GDSGNDAFFEKLDR+GKPRERIGSRLSGGNNFQ+LYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN
        ++DNLNTLSDGMD         FEF                         ++DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGII 
Subjt:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN

Query:  KRSKTGISAKAQRKVAK
        KRSKT ISAKAQRKVA+
Subjt:  KRSKTGISAKAQRKVAK

A0A6J1G586 uncharacterized protein LOC111451027 isoform X1

1.23e-111

82.03

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNVQVAFRTIGGGITRKFKQPSALR+LSTNAARDCS DDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN
        IEDNLNTLSDGMD         FEF                         I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGIIN
Subjt:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN

Query:  KRSKTGISAKAQRKVAK
        KRSKTGISAKAQRKVA+
Subjt:  KRSKTGISAKAQRKVAK

A0A6J1G5B3 uncharacterized protein LOC111451027 isoform X2

4.32e-104

80.19

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNVQVAFRTIGGGITRKFKQPSALR+LSTNAARDCS DDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN
        IEDNLNTLSDGMD         FEF                         I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGIIN
Subjt:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN

Query:  KRSKTGI
        KRSK  +
Subjt:  KRSKTGI

A0A6J1JHF0 uncharacterized protein LOC111484513

2.68e-98

73.73

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        M  VQVA RT+GGG++R+FKQPS LR+LSTNAARD   DD+GK +SFESADDFERRIFGGVS GDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN
        ++DNLNTLSDGMD         FEF                         I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF+ANFITDAGII 
Subjt:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN

Query:  KRSKTGISAKAQRKVAK
        KRSKT ISAKAQRKVA+
Subjt:  KRSKTGISAKAQRKVAK

A0A6J1KYL3 LOW QUALITY PROTEIN: uncharacterized protein LOC111499912

2.58e-103

78.8

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Query:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
        MRNV   FRTIGGGITRKFKQPSALR+LSTNAARDCS DDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG
Subjt:  MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG

Query:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN
        IEDNLNTLSDGMD         FEF                         I+DLDLTKPGVRK PKRVEF V TEEVLR ADFRNVRF+ANFITDAGIIN
Subjt:  IEDNLNTLSDGMDDNT------FEF-------------------------IQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIIN

Query:  KRSKTGISAKAQRKVAK
        KRSKTGISAKAQRKVA+
Subjt:  KRSKTGISAKAQRKVAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G07210.1 Ribosomal protein S18

3.9e-18

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Query:  QPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERI-------GSRLSGGNNFQALYGIEDNLNTLSDGMD
        +P   RSL+TNA    + D     +SF+S+D+ +  +FG  +  D  ++ FF+ L +  K +          GSR SGG +       ++  +  SDG+D
Subjt:  QPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERI-------GSRLSGGNNFQALYGIEDNLNTLSDGMD

Query:  DNTFEFIQDLDLTK-PGVRKPPKRVEF--------------------------QVTTEEVLRKADFRNVRFVANFITDAGIINKRSKTGISAKAQRKVAK
            E     ++ +  G ++   R +F                          +VTTEEVL+ ADFRNVRF+ANFIT+AGII KR +TGISAKAQRK+A+
Subjt:  DNTFEFIQDLDLTK-PGVRKPPKRVEF--------------------------QVTTEEVLRKADFRNVRFVANFITDAGIINKRSKTGISAKAQRKVAK

Sequences

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CDS sequence

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ATGAGGAACGTTCAGGTTGCTTTTCGAACCATTGGAGGTGGCATAACGAGGAAATTTAAGCAACCTTCTGCGCTCAGAAGCCTTTCCACAAACGCCGCTCGAGATTGTAG
TTTGGATGATGAGGGAAAATCCAATTCGTTTGAGTCTGCTGATGACTTTGAACGTCGGATATTTGGTGGCGTATCTTTGGGCGATTCCGGAAACGATGCTTTCTTTGAGA
AGCTTGATAGACTTGGTAAACCTCGTGAAAGGATCGGTTCAAGGCTGAGTGGTGGAAACAATTTTCAGGCGTTGTATGGTATTGAAGATAATCTTAACACGCTGTCGGAT
GGGATGGATGACAATACTTTTGAATTTATACAGGATCTGGATCTAACAAAGCCTGGTGTACGCAAACCTCCCAAAAGAGTTGAGTTTCAGGTGACGACGGAGGAGGTCTT
AAGAAAAGCTGATTTCAGGAATGTTAGGTTTGTGGCGAATTTTATTACCGATGCCGGGATCATTAACAAGAGGAGCAAGACAGGTATAAGTGCCAAAGCACAGAGGAAAG
TTGCCAAAGCACAGAGGCTTAATGCCTTTCACAACAATGGGAACCAAATCATTTGTTTTTGGGAAGACCATGGAGTATCTCGATAA

mRNA sequence

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Protein sequence

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MRNVQVAFRTIGGGITRKFKQPSALRSLSTNAARDCSLDDEGKSNSFESADDFERRIFGGVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSD
GMDDNTFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFVANFITDAGIINKRSKTGISAKAQRKVAKAQRLNAFHNNGNQIICFWEDHGVSR

Csor.00g011990 (gene) of Silver-seed gourd (wild; sororia) v1 genome