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Csor.00g042000 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g042000
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionProtein-serine/threonine phosphatase
Genome locationCsor_Chr07:5793338..5794604
RNA-Seq ExpressionCsor.00g042000
SyntenyCsor.00g042000
Gene Ontology termsGO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595385.1 hypothetical protein SDJN03_11938, partial [Cucurbita argyrosperma subsp. sororia]2.42e-63100Show/hide
Query:  MYTATRSFLCLLTALRKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKGWRRNMKMIQRRRKRKNMKMIQRWRRKRKNMKMIQRWRKRKNMKM
        MYTATRSFLCLLTALRKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKGWRRNMKMIQRRRKRKNMKMIQRWRRKRKNMKMIQRWRKRKNMKM
Subjt:  MYTATRSFLCLLTALRKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKGWRRNMKMIQRRRKRKNMKMIQRWRRKRKNMKMIQRWRKRKNMKM

Query:  QKKSN
        QKKSN
Subjt:  QKKSN
KAG7027393.1 hypothetical protein SDJN02_11405, partial [Cucurbita argyrosperma subsp. argyrosperma]1.99e-10100Show/hide
Query:  KFDDGLQEQYEKKYDPAKQNSFESGSTAK
        KFDDGLQEQYEKKYDPAKQNSFESGSTAK
Subjt:  KFDDGLQEQYEKKYDPAKQNSFESGSTAK
XP_022966542.1 RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Cucurbita maxima]4.62e-1185.37Show/hide
Query:  RKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKG
        RKFDD  QEQYEKK+DP KQNSFESG TAKVG DLMLKGKG
Subjt:  RKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKG
XP_022966543.1 RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Cucurbita maxima]4.62e-1185.37Show/hide
Query:  RKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKG
        RKFDD  QEQYEKK+DP KQNSFESG TAKVG DLMLKGKG
Subjt:  RKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKG
TrEMBL top hitse value%identityAlignment
A0A6J1HN94 Protein-serine/threonine phosphatase2.24e-1185.37Show/hide
Query:  RKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKG
        RKFDD  QEQYEKK+DP KQNSFESG TAKVG DLMLKGKG
Subjt:  RKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKG
A0A6J1HSG0 Protein-serine/threonine phosphatase2.24e-1185.37Show/hide
Query:  RKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKG
        RKFDD  QEQYEKK+DP KQNSFESG TAKVG DLMLKGKG
Subjt:  RKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACACTGCAACCCGGAGCTTTCTGTGCCTCCTAACGGCCTTGAGGAAATTTGACGATGGATTACAGGAGCAATATGAAAAGAAATATGATCCAGCAAAACAAAACAG
TTTTGAAAGCGGGTCAACTGCCAAAGTCGGACCGGATCTAATGCTGAAAGGAAAAGGATGGAGGAGGAACATGAAGATGATACAGAGGAGGAGGAAAAGGAAGAACATGA
AGATGATACAGAGGTGGAGGAGGAAAAGGAAGAACATGAAGATGATACAGAGGTGGAGGAAGAGGAAGAACATGAAGATGCAGAAGAAGAGTAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACACTGCAACCCGGAGCTTTCTGTGCCTCCTAACGGCCTTGAGGAAATTTGACGATGGATTACAGGAGCAATATGAAAAGAAATATGATCCAGCAAAACAAAACAG
TTTTGAAAGCGGGTCAACTGCCAAAGTCGGACCGGATCTAATGCTGAAAGGAAAAGGATGGAGGAGGAACATGAAGATGATACAGAGGAGGAGGAAAAGGAAGAACATGA
AGATGATACAGAGGTGGAGGAGGAAAAGGAAGAACATGAAGATGATACAGAGGTGGAGGAAGAGGAAGAACATGAAGATGCAGAAGAAGAGTAACTAA
Protein sequenceShow/hide protein sequence
MYTATRSFLCLLTALRKFDDGLQEQYEKKYDPAKQNSFESGSTAKVGPDLMLKGKGWRRNMKMIQRRRKRKNMKMIQRWRRKRKNMKMIQRWRKRKNMKMQKKSN