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Csor.00g044150 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g044150
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
Genome locationCsor_Chr18:1541742..1542273
RNA-Seq ExpressionCsor.00g044150
SyntenyCsor.00g044150
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573158.1 hypothetical protein SDJN03_27045, partial [Cucurbita argyrosperma subsp. sororia]6.30e-64100Show/hide
Query:  MLVALVSFGCKNLLSKGLKIIVAAAVDTGVTEARARIFGHILNPIECSLDDGNSSLWMDEQAKEESCVLEQYESYTELAREIPFSAHVALYGNGQMIMDK
        MLVALVSFGCKNLLSKGLKIIVAAAVDTGVTEARARIFGHILNPIECSLDDGNSSLWMDEQAKEESCVLEQYESYTELAREIPFSAHVALYGNGQMIMDK
Subjt:  MLVALVSFGCKNLLSKGLKIIVAAAVDTGVTEARARIFGHILNPIECSLDDGNSSLWMDEQAKEESCVLEQYESYTELAREIPFSAHVALYGNGQMIMDK

Query:  N
        N
Subjt:  N
XP_004293878.1 PREDICTED: uncharacterized protein LOC101298294 [Fragaria vesca subsp. vesca]8.08e-0576.67Show/hide
Query:  SKGLKIIVAAAVDTGVTEARARIFGHILNP
        S+ LK I+ AAV+TGVTEARARIFGH+LNP
Subjt:  SKGLKIIVAAAVDTGVTEARARIFGHILNP
XP_008383262.1 28S ribosomal protein S33, mitochondrial [Malus domestica]2.36e-0482.14Show/hide
Query:  GLKIIVAAAVDTGVTEARARIFGHILNP
        GLK ++ AAV TGVTEARARIFGHILNP
Subjt:  GLKIIVAAAVDTGVTEARARIFGHILNP
XP_009340264.1 PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri]2.36e-0482.14Show/hide
Query:  GLKIIVAAAVDTGVTEARARIFGHILNP
        GLK ++ AAV TGVTEARARIFGHILNP
Subjt:  GLKIIVAAAVDTGVTEARARIFGHILNP
XP_038876969.1 28S ribosomal protein S33, mitochondrial [Benincasa hispida]8.25e-0580Show/hide
Query:  SKGLKIIVAAAVDTGVTEARARIFGHILNP
        + GLK +VAAAV+ GVTEARARIFGHILNP
Subjt:  SKGLKIIVAAAVDTGVTEARARIFGHILNP
TrEMBL top hitse value%identityAlignment
A0A2P6Q7J6 Putative ribosomal protein S27/S333.06e-0481.48Show/hide
Query:  LKIIVAAAVDTGVTEARARIFGHILNP
        LK I+ AAV+TGVTEARARIFGH+LNP
Subjt:  LKIIVAAAVDTGVTEARARIFGHILNP
A0A2P6RGD2 Putative ribosomal protein S27/S331.54e-0476.67Show/hide
Query:  SKGLKIIVAAAVDTGVTEARARIFGHILNP
        S  LK I+ AAV+TGVTEARARIFGH+LNP
Subjt:  SKGLKIIVAAAVDTGVTEARARIFGHILNP
A0A498ITZ3 Uncharacterized protein1.14e-0482.14Show/hide
Query:  GLKIIVAAAVDTGVTEARARIFGHILNP
        GLK ++ AAV TGVTEARARIFGHILNP
Subjt:  GLKIIVAAAVDTGVTEARARIFGHILNP
A0A498JU21 Uncharacterized protein3.18e-0475Show/hide
Query:  GLKIIVAAAVDTGVTEARARIFGHILNP
        GLK ++ AAV+TGVTEARARIFGH++NP
Subjt:  GLKIIVAAAVDTGVTEARARIFGHILNP
A0A5N5FF40 28S ribosomal protein S331.14e-0482.14Show/hide
Query:  GLKIIVAAAVDTGVTEARARIFGHILNP
        GLK ++ AAV TGVTEARARIFGHILNP
Subjt:  GLKIIVAAAVDTGVTEARARIFGHILNP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).8.9e-0562.5Show/hide
Query:  LLSKGLKIIVAAAVDTGVTEARARIFGHILNP
        + S  LK ++++AV  GVTEARARIFGH+LNP
Subjt:  LLSKGLKIIVAAAVDTGVTEARARIFGHILNP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTTGCCTTAGTTTCTTTTGGATGTAAAAACCTTCTGAGCAAGGGCCTGAAGATTATTGTTGCTGCAGCAGTCGATACGGGAGTGACCGAAGCAAGGGCACGGAT
ATTTGGTCATATACTGAATCCAATAGAGTGTAGCCTTGATGATGGGAATTCTAGTCTTTGGATGGACGAGCAAGCTAAGGAGGAATCATGTGTTCTCGAGCAATATGAGT
CGTATACCGAGCTTGCCCGAGAGATCCCATTCAGCGCCCATGTTGCTCTCTATGGAAATGGACAAATGATAATGGATAAGAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTTGCCTTAGTTTCTTTTGGATGTAAAAACCTTCTGAGCAAGGGCCTGAAGATTATTGTTGCTGCAGCAGTCGATACGGGAGTGACCGAAGCAAGGGCACGGAT
ATTTGGTCATATACTGAATCCAATAGAGTGTAGCCTTGATGATGGGAATTCTAGTCTTTGGATGGACGAGCAAGCTAAGGAGGAATCATGTGTTCTCGAGCAATATGAGT
CGTATACCGAGCTTGCCCGAGAGATCCCATTCAGCGCCCATGTTGCTCTCTATGGAAATGGACAAATGATAATGGATAAGAACTAG
Protein sequenceShow/hide protein sequence
MLVALVSFGCKNLLSKGLKIIVAAAVDTGVTEARARIFGHILNPIECSLDDGNSSLWMDEQAKEESCVLEQYESYTELAREIPFSAHVALYGNGQMIMDKN