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Csor.00g046860 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g046860
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionChloroplast thylakoid membrane
Genome locationCsor_Chr12:4283713..4284571
RNA-Seq ExpressionCsor.00g046860
SyntenyCsor.00g046860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585598.1 hypothetical protein SDJN03_18331, partial [Cucurbita argyrosperma subsp. sororia]4.70e-4798.72Show/hide
Query:  SNAFDYSNKDMENVRRMLMTGIPLFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEVLSS
        +NAFDYSNKDMENVRRMLMTGIPLFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEVLSS
Subjt:  SNAFDYSNKDMENVRRMLMTGIPLFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEVLSS

KAG6585830.1 hypothetical protein SDJN03_18563, partial [Cucurbita argyrosperma subsp. sororia]2.36e-64100Show/hide
Query:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIPLFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEVL
        MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIPLFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEVL
Subjt:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIPLFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEVL

Query:  SS
        SS
Subjt:  SS

KAG7020512.1 hypothetical protein SDJN02_17197, partial [Cucurbita argyrosperma subsp. argyrosperma]1.04e-4873.23Show/hide
Query:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-------------------LFNFK------LVAANAFDYSNKDMENVRRMLMS
        MISFLAA+PSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLM+ +                     F++       LVAANAFDYSNKDMENVRRMLMS
Subjt:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-------------------LFNFK------LVAANAFDYSNKDMENVRRMLMS

Query:  VARHCVLKDRNSFVQFQASTGVEVLSS
        VARHCVLKDRNSFVQFQASTGVEVLSS
Subjt:  VARHCVLKDRNSFVQFQASTGVEVLSS

XP_022961866.1 uncharacterized protein LOC111462505 isoform X1 [Cucurbita moschata]8.76e-2858.65Show/hide
Query:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST
        M+SFL+AMPSLFLPAPA A ++GIS   D+  +  +   R L+  I      L    L+ +N  DYSNKDME+V+RML S AR CVLKDRNSFVQFQAST
Subjt:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST

Query:  GVEV
        GVEV
Subjt:  GVEV

XP_022961867.1 uncharacterized protein LOC111462505 isoform X2 [Cucurbita moschata]4.54e-2858.65Show/hide
Query:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST
        M+SFL+AMPSLFLPAPA A ++GIS   D+  +  +   R L+  I      L    L+ +N  DYSNKDME+V+RML S AR CVLKDRNSFVQFQAST
Subjt:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST

Query:  GVEV
        GVEV
Subjt:  GVEV

TrEMBL top hitse value%identityAlignment
A0A5A7VAP0 Chloroplast thylakoid membrane1.05e-2554.81Show/hide
Query:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST
        M+SF++AMPSLFLPAPA+A ++GIS   D+  +  +   + L+  I      L    L+ +N  DYSNKDME+V+R+L S AR CVLKDR+SFVQFQAST
Subjt:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST

Query:  GVEV
        GVEV
Subjt:  GVEV

A0A6J1HBA0 uncharacterized protein LOC111462505 isoform X22.20e-2858.65Show/hide
Query:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST
        M+SFL+AMPSLFLPAPA A ++GIS   D+  +  +   R L+  I      L    L+ +N  DYSNKDME+V+RML S AR CVLKDRNSFVQFQAST
Subjt:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST

Query:  GVEV
        GVEV
Subjt:  GVEV

A0A6J1HBI9 uncharacterized protein LOC111462505 isoform X14.24e-2858.65Show/hide
Query:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST
        M+SFL+AMPSLFLPAPA A ++GIS   D+  +  +   R L+  I      L    L+ +N  DYSNKDME+V+RML S AR CVLKDRNSFVQFQAST
Subjt:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST

Query:  GVEV
        GVEV
Subjt:  GVEV

A0A6J1K7N2 uncharacterized protein LOC111492399 isoform X24.39e-2858.65Show/hide
Query:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST
        M+SFL+AMPSLFLPAPA A ++GIS   D+  +  +   R L+  I      L    L+ +N  DYSNKDME+V+RML S AR CVLKDRNSFVQFQAST
Subjt:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST

Query:  GVEV
        GVEV
Subjt:  GVEV

A0A6J1K9U3 uncharacterized protein LOC111492399 isoform X18.46e-2858.65Show/hide
Query:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST
        M+SFL+AMPSLFLPAPA A ++GIS   D+  +  +   R L+  I      L    L+ +N  DYSNKDME+V+RML S AR CVLKDRNSFVQFQAST
Subjt:  MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIP-----LFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQAST

Query:  GVEV
        GVEV
Subjt:  GVEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G42765.1 INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).1.0e-0837.08Show/hide
Query:  PAAALNLGISNAFDYSNKDMENVRRMLMTGIPLFNFKLVAA-----NAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV
        PA A +LGIS   ++     +   R L+  I      L +A     +  DY+ KD+EN++ +  S AR CV K+R+S V FQ+ +GVEV
Subjt:  PAAALNLGISNAFDYSNKDMENVRRMLMTGIPLFNFKLVAA-----NAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCATTTCTCGCTGCGATGCCGTCTCTGTTTCTACCTGCTCCTGCCGCTGCTTTGAATCTCGGCATTTCTAATGCGTTCGATTACTCGAACAAGGACATG
GAGAATGTTCGAAGAATGCTCATGACAGGAATTCCTTTGTTCAATTTCAAGCTAGTTGCAGCCAATGCGTTTGATTACTCGAACAAGGATATGGAGAATGTTCGA
AGAATGCTCATGTCTGTTGCAAGGCATTGCGTTTTGAAGGACAGGAATTCCTTTGTTCAATTTCAAGCAAGCACAGGAGTCGAGGTTCTATCTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCATTTCTCGCTGCGATGCCGTCTCTGTTTCTACCTGCTCCTGCCGCTGCTTTGAATCTCGGCATTTCTAATGCGTTCGATTACTCGAACAAGGACATG
GAGAATGTTCGAAGAATGCTCATGACAGGAATTCCTTTGTTCAATTTCAAGCTAGTTGCAGCCAATGCGTTTGATTACTCGAACAAGGATATGGAGAATGTTCGA
AGAATGCTCATGTCTGTTGCAAGGCATTGCGTTTTGAAGGACAGGAATTCCTTTGTTCAATTTCAAGCAAGCACAGGAGTCGAGGTTCTATCTTCCTAA
Protein sequenceShow/hide protein sequence
MISFLAAMPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMTGIPLFNFKLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEVLSS