; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Csor.00g067390 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g067390
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionpentatricopeptide repeat-containing protein At1g71460, chloroplastic
Genome locationCsor_Chr01:5068795..5069238
RNA-Seq ExpressionCsor.00g067390
SyntenyCsor.00g067390
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607513.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.82e-98100Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQKASQLMRLHFLLLLLLALEPNLWLTLNRFTLIFG
        LKEALTIMDYLDQKASQLMRLHFLLLLLLALEPNLWLTLNRFTLIFG
Subjt:  LKEALTIMDYLDQKASQLMRLHFLLLLLLALEPNLWLTLNRFTLIFG
KAG7037161.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.84e-6899.12Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQK
        LKEALTIMDYLDQ+
Subjt:  LKEALTIMDYLDQK
XP_022948408.1 pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Cucurbita moschata]2.14e-6798.25Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSFTLSLHLHPFPPNPLAVA AAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQK
        LKEALTIMDYLDQ+
Subjt:  LKEALTIMDYLDQK
XP_022973460.1 pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Cucurbita maxima]3.00e-6798.25Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSFTLSLHL PFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQK
        LKEALTIMDYLDQ+
Subjt:  LKEALTIMDYLDQK
XP_023523645.1 pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Cucurbita pepo subsp. pepo]2.03e-6899.12Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQK
        LKEALTIMDYLDQ+
Subjt:  LKEALTIMDYLDQK
TrEMBL top hitse value%identityAlignment
A0A0A0KXW0 Uncharacterized protein7.20e-4573.68Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSF +SLHL PF PN LA A A  NS  GHRLSRIK++T    DTPP + K+V+KF+NRKRP FAE+DAFP SLPLHTKNPHAIY+D+QRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQK
        LKEALTIMDY+DQ+
Subjt:  LKEALTIMDYLDQK
A0A1S3CBS1 pentatricopeptide repeat-containing protein At1g71460, chloroplastic3.52e-4371.05Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSF +SLHL PFPPN L  A A  N   GH+LSRIK++T    D PP + K+V+KF+NRKRP FAE+DAFP SLPLHTKNPHAIY+DIQRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQK
        LKEALTI+DY+DQ+
Subjt:  LKEALTIMDYLDQK
A0A5A7TCH1 Pentatricopeptide repeat-containing protein3.66e-4371.05Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSF +SLHL PFPPN L  A A  N   GH+LSRIK++T    D PP + K+V+KF+NRKRP FAE+DAFP SLPLHTKNPHAIY+DIQRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQK
        LKEALTI+DY+DQ+
Subjt:  LKEALTIMDYLDQK
A0A6J1G986 pentatricopeptide repeat-containing protein At1g71460, chloroplastic1.04e-6798.25Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSFTLSLHLHPFPPNPLAVA AAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQK
        LKEALTIMDYLDQ+
Subjt:  LKEALTIMDYLDQK
A0A6J1IBE8 pentatricopeptide repeat-containing protein At1g71460, chloroplastic1.45e-6798.25Show/hide
Query:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
        MEISSSFTLSLHL PFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK
Subjt:  MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNK

Query:  LKEALTIMDYLDQK
        LKEALTIMDYLDQ+
Subjt:  LKEALTIMDYLDQK
SwissProt top hitse value%identityAlignment
Q9C9I3 Pentatricopeptide repeat-containing protein At1g71460, chloroplastic1.1e-1139.81Show/hide
Query:  PLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQKASQLM
        P +++   + ++  HR    K      +   P R +  +    +K   F ERDAFP SLPLH+KNP+ I++DIQ FARQN L+ ALTI+DYL+Q+   + 
Subjt:  PLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQKASQLM

Query:  RLHFLLLL
           F  LL
Subjt:  RLHFLLLL
Arabidopsis top hitse value%identityAlignment
AT1G71460.1 Pentatricopeptide repeat (PPR-like) superfamily protein7.6e-1339.81Show/hide
Query:  PLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQKASQLM
        P +++   + ++  HR    K      +   P R +  +    +K   F ERDAFP SLPLH+KNP+ I++DIQ FARQN L+ ALTI+DYL+Q+   + 
Subjt:  PLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDYLDQKASQLM

Query:  RLHFLLLL
           F  LL
Subjt:  RLHFLLLL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTTCGTCCTCGTTCACTCTGTCCCTTCATCTTCACCCTTTCCCTCCAAATCCTCTCGCCGTCGCCTTCGCGGCCGCTAATTCCAATTCTGGCCACCGACTGTC
CCGAATCAAAACCTCGACACAGACACTGACCGATACACCGCCCTTAAGAAACAAAGTAGTTGCCAAATTTCAGAACAGAAAACGCCCAGTTTTTGCTGAGAGAGATGCTT
TTCCTGAATCTTTACCACTTCACACCAAGAACCCACATGCCATTTACAAGGATATTCAAAGATTTGCGCGCCAAAATAAGCTCAAAGAGGCACTTACGATTATGGACTAT
TTGGATCAAAAGGCATCCCAGTTAATGCGACTACATTTTCTTCTCTTATTACTGCTTGCGTTAGAGCCAAATCTTTGGCTAACGCTAAACAGGTTCACGCTCATATTCGG
ATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATTTCGTCCTCGTTCACTCTGTCCCTTCATCTTCACCCTTTCCCTCCAAATCCTCTCGCCGTCGCCTTCGCGGCCGCTAATTCCAATTCTGGCCACCGACTGTC
CCGAATCAAAACCTCGACACAGACACTGACCGATACACCGCCCTTAAGAAACAAAGTAGTTGCCAAATTTCAGAACAGAAAACGCCCAGTTTTTGCTGAGAGAGATGCTT
TTCCTGAATCTTTACCACTTCACACCAAGAACCCACATGCCATTTACAAGGATATTCAAAGATTTGCGCGCCAAAATAAGCTCAAAGAGGCACTTACGATTATGGACTAT
TTGGATCAAAAGGCATCCCAGTTAATGCGACTACATTTTCTTCTCTTATTACTGCTTGCGTTAGAGCCAAATCTTTGGCTAACGCTAAACAGGTTCACGCTCATATTCGG
ATAA
Protein sequenceShow/hide protein sequence
MEISSSFTLSLHLHPFPPNPLAVAFAAANSNSGHRLSRIKTSTQTLTDTPPLRNKVVAKFQNRKRPVFAERDAFPESLPLHTKNPHAIYKDIQRFARQNKLKEALTIMDY
LDQKASQLMRLHFLLLLLLALEPNLWLTLNRFTLIFG