; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Csor.00g074100 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g074100
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description50S ribosomal protein L18
Genome locationCsor_Chr11:6921463..6923848
RNA-Seq ExpressionCsor.00g074100
SyntenyCsor.00g074100
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588487.1 hypothetical protein SDJN03_17052, partial [Cucurbita argyrosperma subsp. sororia]2.42e-92100Show/hide
Query:  MSIMLNPLAGTLHRRSSFVSAATSRQHQRRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDV
        MSIMLNPLAGTLHRRSSFVSAATSRQHQRRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDV
Subjt:  MSIMLNPLAGTLHRRSSFVSAATSRQHQRRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDV

Query:  AAAAAAKIGKLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL
        AAAAAAKIGKLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL
Subjt:  AAAAAAKIGKLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL

KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]1.38e-5990.52Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMESTRDVAAAA  KIGKLL      KGIPAVCVHLKREQKYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

KAG7022317.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma]8.32e-8695.21Show/hide
Query:  SIMLNPLAGTLHRRSSFVSAATSRQHQRRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVA
        S +  PLAGTLHRRSSFVSAATSRQHQ RLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKALRPSMESTRDVA
Subjt:  SIMLNPLAGTLHRRSSFVSAATSRQHQRRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVA

Query:  AAAAAKIGKLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL
        AAAAAKIGKLLKGIPAVCVHLKRE KYHGKIKAVIDSVREAGIKLL
Subjt:  AAAAAKIGKLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]1.38e-5990.52Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMESTRDVAAAA  KIGKLL      KGIPAVCVHLKREQKYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

XP_022970166.1 uncharacterized protein LOC111469142 [Cucurbita maxima]2.39e-6091.38Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALRPSMESTRDVAAA   KIGKLL      KGIPAVCVHLKREQKYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK

Query:  IKAVIDSVREAGIKLL
        IKAVIDSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A5D3DYC1 50S ribosomal protein L186.38e-5887.93Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK
        MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALR SMESTRDVAAAA  KIGKLL      KGIPAVCVHLKREQKYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAVIDSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

A0A6J1CWR7 uncharacterized protein LOC1110152864.49e-5887.93Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR SMESTRDVAAAA  KIGKLL      KGIPAVCVHLKREQKYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620256.67e-6090.52Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMESTRDVAAAA  KIGKLL      KGIPAVCVHLKREQKYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

A0A6J1HZV8 uncharacterized protein LOC1114691421.16e-6091.38Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALRPSMESTRDVAAA   KIGKLL      KGIPAVCVHLKREQKYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK

Query:  IKAVIDSVREAGIKLL
        IKAVIDSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679402.71e-5989.66Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LR SMESTRDVAAAA  KIGKLL      KGIPAVCVHLKREQKYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A7MWH4 50S ribosomal protein L188.8e-0641.49Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  ++ T +V AA A  +GK      L KG+ AV       Q YHG++ A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK

A8IAP8 50S ribosomal protein L186.7e-0640.43Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK
        L +H T+K++ AQ+I         AASS EK LR S+++  DV AA A  IGKL+      KG+ AV V  +    YHG++KA+ +  RE G++
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK

B7VLE1 50S ribosomal protein L186.7e-0640.43Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  +++T +V AA A  +GK      L KG+ +V       Q YHG++ A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK

P52863 50S ribosomal protein L185.1e-0641.49Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK
        L +H T ++V AQVI S  + V +AAS+ EKA+R  +++T +V AA A  +GK      L KG+  V       Q YHG++ A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK

Q5E898 50S ribosomal protein L188.8e-0642.55Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK
        L +H T ++  AQVI    + V +AAS+ EKA+R  + ST + AAA A  IGKL+      KGI  V       Q YHG++ A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREQKYHGKIKAVIDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT3G20230.1 Ribosomal L18p/L5e family protein4.0e-0626.57Show/hide
Query:  LAGTLHRRSSFVSAATSRQHQRRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAK
        ++  + ++ SFV AA +R+ +   + R             R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R ++ S  D    A   
Subjt:  LAGTLHRRSSFVSAATSRQHQRRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAK

Query:  IGKLL------KGIPAVCVHLKREQKYHGKIKAVIDSVREAGI
        IGKL+        + AV    ++ ++  GK+  VID+++E GI
Subjt:  IGKLL------KGIPAVCVHLKREQKYHGKIKAVIDSVREAGI

AT3G45020.1 Ribosomal L18p/L5e family protein6.4e-0429.73Show/hide
Query:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIP-----AVCVHLKREQKYHG-----KIKAVI
        LK YVL++  + KY++A V+      + + AS+ E  ++ S+E  R   A AAA +G++L      +G+       +   +K+E +  G     K+ AVI
Subjt:  LKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIP-----AVCVHLKREQKYHG-----KIKAVI

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein1.2e-3773.28Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREQKYHGK
        MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ TRDV  AAA+KIGK      L+K IPAV + +K+EQ+YHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREQKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAVIDSVREAG+KLL
Subjt:  IKAVIDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATAATGTTAAATCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACGCCGTCTTTCGTCGAGAGTAAGGGA
GATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACT
CCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAGGAGAAGGCACTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCTGCTGCAAAGATCGGGAAA
TTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCT
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTATAATGTTAAATCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACGCCGTCTTTCGTCGAGAGTAAGGGA
GATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACT
CCGAAACGGCCACCGTTGCTTCGGCTGCAAGCTCGCAGGAGAAGGCACTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCTGCTGCAAAGATCGGGAAA
TTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAGTATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCT
TTGA
Protein sequenceShow/hide protein sequence
MSIMLNPLAGTLHRRSSFVSAATSRQHQRRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGK
LLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL