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Csor.00g080600 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g080600
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionsterile alpha motif (SAM) domain-containing protein
Genome locationCsor_Chr01:12954876..12955658
RNA-Seq ExpressionCsor.00g080600
SyntenyCsor.00g080600
Gene Ontology termsGO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0031848 - protection from non-homologous end joining at telomere (biological process)
GO:0036297 - interstrand cross-link repair (biological process)
GO:0003684 - damaged DNA binding (molecular function)
GO:0035312 - 5'-3' exodeoxyribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608328.1 hypothetical protein SDJN03_01670, partial [Cucurbita argyrosperma subsp. sororia]4.74e-133100Show/hide
Query:  MIGASDRSSRLTFIFKRPRNVFKLALNPNFPPFHLRQNFRNPLWIFQLPSSSIPFHLPRLFLRPHAPPPPRTAATTMPPPPTTTTTTIFFLPPIQSSSRG
        MIGASDRSSRLTFIFKRPRNVFKLALNPNFPPFHLRQNFRNPLWIFQLPSSSIPFHLPRLFLRPHAPPPPRTAATTMPPPPTTTTTTIFFLPPIQSSSRG
Subjt:  MIGASDRSSRLTFIFKRPRNVFKLALNPNFPPFHLRQNFRNPLWIFQLPSSSIPFHLPRLFLRPHAPPPPRTAATTMPPPPTTTTTTIFFLPPIQSSSRG

Query:  LRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGKIWISLLSS
        LRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGKIWISLLSS
Subjt:  LRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGKIWISLLSS
KAG7037677.1 hypothetical protein SDJN02_01307, partial [Cucurbita argyrosperma subsp. argyrosperma]3.18e-5994.17Show/hide
Query:  PPTTTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI
        PP  TTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLN LS WRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI
Subjt:  PPTTTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI

Query:  GKI
          I
Subjt:  GKI
XP_022940002.1 uncharacterized protein LOC111445765 [Cucurbita moschata]1.04e-5385.19Show/hide
Query:  PPTTTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI
        PP  TTTTIFFLPPIQSSSRGLRPRNLRLIAP  R QEAEAFG NRHWQGLN  SKWRMANTSANYN TNQKDVTILFVDAI VEAFNSKTLFLIGCYTI
Subjt:  PPTTTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI

Query:  GKIWISLL
          I I+++
Subjt:  GKIWISLL
XP_023524427.1 uncharacterized protein LOC111788332 [Cucurbita pepo subsp. pepo]1.08e-4986.41Show/hide
Query:  PPTTTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI
        PP  TTTTIFFLP IQSSSR LR RNL   APH R QEAEAFG NRHWQGLN LSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI
Subjt:  PPTTTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI

Query:  GKI
          I
Subjt:  GKI
XP_038897130.1 uncharacterized protein LOC120085288 isoform X2 [Benincasa hispida]1.60e-0464.86Show/hide
Query:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
        Y+F  Q+ V    +DAI+ EAFN KTLFLIGCYTIGK
Subjt:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
TrEMBL top hitse value%identityAlignment
A0A0A0L5G7 SAM domain-containing protein7.86e-0564.86Show/hide
Query:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
        Y+F  Q+ V    +DAI+ EAFN KTLFLIGCYTIGK
Subjt:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
A0A1S3BUM9 DNA cross-link repair protein SNM17.86e-0564.86Show/hide
Query:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
        Y+F  Q+ V    +DAI+ EAFN KTLFLIGCYTIGK
Subjt:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
A0A5D3D910 DNA cross-link repair protein SNM17.86e-0564.86Show/hide
Query:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
        Y+F  Q+ V    +DAI+ EAFN KTLFLIGCYTIGK
Subjt:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
A0A6J1FIF4 uncharacterized protein LOC1114457655.03e-5485.19Show/hide
Query:  PPTTTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI
        PP  TTTTIFFLPPIQSSSRGLRPRNLRLIAP  R QEAEAFG NRHWQGLN  SKWRMANTSANYN TNQKDVTILFVDAI VEAFNSKTLFLIGCYTI
Subjt:  PPTTTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI

Query:  GKIWISLL
          I I+++
Subjt:  GKIWISLL
A0A6J1IKZ9 uncharacterized protein LOC111477185 isoform X27.81e-0564.86Show/hide
Query:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
        Y+F  Q+ V    +DAI+ EAFN KTLFLIGCYTIGK
Subjt:  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45700.1 sterile alpha motif (SAM) domain-containing protein3.0e-0648.28Show/hide
Query:  HWQGLNHLSKWRMANTSAN--YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK
        +W   +H+S   +  T  N  Y+F  Q+ V    V+AI+ EAFN KTLFLIG YTIGK
Subjt:  HWQGLNHLSKWRMANTSAN--YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGCGCGTCCGACCGGTCTTCCCGGTTAACCTTTATTTTTAAGCGTCCAAGAAATGTCTTTAAATTGGCTCTAAATCCAAATTTCCCTCCGTTTCATTTGCGCCA
AAATTTCAGAAACCCTCTCTGGATCTTCCAGCTTCCTTCGTCATCAATTCCGTTTCATCTTCCCAGATTGTTCCTCCGCCCTCATGCCCCTCCTCCCCCCAGAACCGCTG
CCACAACAATGCCGCCGCCGCCGACGACGACGACGACGACGATCTTCTTCCTTCCACCCATACAGTCTTCTTCTCGCGGTCTTAGACCTCGCAATCTCCGACTTATCGCT
CCACACTTGCGCATTCAAGAGGCCGAAGCGTTCGGCTCCAATCGCCACTGGCAAGGACTCAATCATTTGAGTAAATGGAGAATGGCCAATACTTCTGCAAATTATAATTT
CACGAATCAGAAGGACGTTACAATTTTGTTTGTTGATGCCATTGAGGTTGAAGCTTTCAACTCAAAAACTCTGTTCCTGATTGGATGCTATACCATCGGTAAAATTTGGA
TCTCGCTTTTGTCATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGGCGCGTCCGACCGGTCTTCCCGGTTAACCTTTATTTTTAAGCGTCCAAGAAATGTCTTTAAATTGGCTCTAAATCCAAATTTCCCTCCGTTTCATTTGCGCCA
AAATTTCAGAAACCCTCTCTGGATCTTCCAGCTTCCTTCGTCATCAATTCCGTTTCATCTTCCCAGATTGTTCCTCCGCCCTCATGCCCCTCCTCCCCCCAGAACCGCTG
CCACAACAATGCCGCCGCCGCCGACGACGACGACGACGACGATCTTCTTCCTTCCACCCATACAGTCTTCTTCTCGCGGTCTTAGACCTCGCAATCTCCGACTTATCGCT
CCACACTTGCGCATTCAAGAGGCCGAAGCGTTCGGCTCCAATCGCCACTGGCAAGGACTCAATCATTTGAGTAAATGGAGAATGGCCAATACTTCTGCAAATTATAATTT
CACGAATCAGAAGGACGTTACAATTTTGTTTGTTGATGCCATTGAGGTTGAAGCTTTCAACTCAAAAACTCTGTTCCTGATTGGATGCTATACCATCGGTAAAATTTGGA
TCTCGCTTTTGTCATCTTGA
Protein sequenceShow/hide protein sequence
MIGASDRSSRLTFIFKRPRNVFKLALNPNFPPFHLRQNFRNPLWIFQLPSSSIPFHLPRLFLRPHAPPPPRTAATTMPPPPTTTTTTIFFLPPIQSSSRGLRPRNLRLIA
PHLRIQEAEAFGSNRHWQGLNHLSKWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGKIWISLLSS