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Csor.00g083530 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g083530
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionDynein light chain
Genome locationCsor_Chr17:7500774..7501293
RNA-Seq ExpressionCsor.00g083530
SyntenyCsor.00g083530
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575532.1 hypothetical protein SDJN03_26171, partial [Cucurbita argyrosperma subsp. sororia]2.41e-61100Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
        MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI

XP_011659570.1 dynein light chain LC6, flagellar outer arm [Cucumis sativus]3.17e-5894.51Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YDVFDCKSIAAHIKKDFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI

XP_022953777.1 dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata]1.79e-60100Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

XP_022992454.1 dynein light chain LC6, flagellar outer arm-like [Cucurbita maxima]3.30e-5996.7Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALDRYDV DCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI

XP_038897874.1 dynein light chain LC6, flagellar outer arm-like [Benincasa hispida]1.57e-5894.51Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
        MLEGKAL+QDTDMPGKMQIQAMDAAS+ALD YDVFDCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI

TrEMBL top hitse value%identityAlignment
A0A0A0K947 Dynein light chain1.54e-5894.51Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YDVFDCKSIAAHIKKDFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI

A0A1S3CGU5 Dynein light chain1.54e-5894.51Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YDVFDCKSIAAHIKKDFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI

A0A5A7UW48 Dynein light chain1.54e-5894.51Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YDVFDCKSIAAHIKKDFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI

A0A6J1GP96 Dynein light chain8.65e-61100Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

A0A6J1JVQ9 Dynein light chain1.60e-5996.7Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALDRYDV DCKSIAAHIKKDFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm3.4e-1647.19Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M E KA++++ DMP  MQ  A+D A+QAL+++++   K IAA+IKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

P61285 Dynein light chain 1, cytoplasmic9.9e-1644.94Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  +++ A+QAL++Y++   K IAAHIKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

P63167 Dynein light chain 1, cytoplasmic9.9e-1644.94Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  +++ A+QAL++Y++   K IAAHIKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Q22799 Dynein light chain 1, cytoplasmic5.8e-1646.07Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M++ KA++++ DM   MQ  A+D A+QAL++Y++   K IAA+IKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Q24117 Dynein light chain 1, cytoplasmic9.9e-1646.07Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  A+D A+QAL++Y++   K IAA+IKK+FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 111.9e-2279.66Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCV
        MLEGKA+V+D+DMP KMQ+QAM  ASQALD +DVFDCKSIA HIKK+FD+RYGSGWQCV
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 115.9e-4083.33Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKA+V+D+DMP KMQ+QAM  ASQALD +DVFDCKSIA HIKK+FD+RYGSGWQCVVGSNFGCFFTHSKG+FIYF+LETL FLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

AT3G16120.1 Dynein light chain type 1 family protein4.7e-3780Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKA V++TDMP KMQ+QAM  ASQ+LD +DVFD  SIAAHIKK+FD+RYGSGWQCVVG+NFGCFFTHSKG+FIYF L TLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

AT4G27360.1 Dynein light chain type 1 family protein5.5e-2254.44Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKA++ DTDM   M+  A+  AS+ALD +DV +   IA  IKK+FD  YGSGWQC+VG++FG F TH  G FI+F + +L  L+FKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

AT5G20110.1 Dynein light chain type 1 family protein1.2e-1650Show/hide
Query:  DMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        DMPG MQ  A   A   LD  + F  K +A ++KK+FD  YG  W C+VGS+FG F THS G FIYF ++ L  L+FK
Subjt:  DMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGCAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTCAAGCTCTGGATCGCTATGATGTCTTC
GACTGCAAATCCATTGCTGCCCACATCAAAAAGGATTTTGACGACAGATATGGAAGCGGATGGCAATGTGTGGTGGGTTCAAATTTTGGTTGTTTCTTCACCCAC
TCCAAAGGCTCTTTCATCTACTTCAAACTGGAGACTCTTAACTTTCTCATCTTCAAAGGGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAAGGCAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTCAAGCTCTGGATCGCTATGATGTCTTC
GACTGCAAATCCATTGCTGCCCACATCAAAAAGGATTTTGACGACAGATATGGAAGCGGATGGCAATGTGTGGTGGGTTCAAATTTTGGTTGTTTCTTCACCCAC
TCCAAAGGCTCTTTCATCTACTTCAAACTGGAGACTCTTAACTTTCTCATCTTCAAAGGGATTTGA
Protein sequenceShow/hide protein sequence
MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI