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Csor.00g199380 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g199380
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionDNA-directed RNA polymerase subunit omega
Genome locationCsor_Chr03:4484307..4486749
RNA-Seq ExpressionCsor.00g199380
SyntenyCsor.00g199380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5520078.1 hypothetical protein DKX38_024397 [Salix brachista]1.04e-4250.65Show/hide
Query:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVD--GRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVT
        VA + G+ EH RVL  +SWRNID VR H DGAV   GRVEGC+  VV + V  ++D + N+M+F+VE+LE+ GA+GSW+A ++ +FTE+A+V +S+DDV 
Subjt:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVD--GRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVT

Query:  AFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG
        A DE+ + L V+E A D P+GGD   DLL   GAALV    V V  RH + + G
Subjt:  AFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG

KAF9665277.1 hypothetical protein SADUNF_Sadunf16G0105900 [Salix dunnii]1.52e-4251.95Show/hide
Query:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDG--RVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVT
        VA + G+ EH RVL  +SWRNID VR H DGAV    RVE C+  VV E V  +D+A+ N+M+F+VE+LE+ GA+GSW+A  + +FTE+A+V +S+DDV 
Subjt:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDG--RVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVT

Query:  AFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG
        A DE+ V L V+E A D P+GGD   DLL    AALV   SV VE RH + + G
Subjt:  AFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG

KAG2404602.1 uncharacterized protein HKW66_Vig0115240 [Vigna angularis]3.57e-4558.55Show/hide
Query:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDG-RVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTA
        VA +DG+DEHARV+ GV+  +I +V    DGA  G RVEGC+G VV EAV A+D AEAN++A VVE++E+LGA G  +AG+ A+  E A VA+S DDV A
Subjt:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDG-RVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTA

Query:  FDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDR
          EV VGLWVVEA   GPHGGDR  DLL+ GGAALVR   V V   H V DR
Subjt:  FDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDR

KAG6603563.1 hypothetical protein SDJN03_04172, partial [Cucurbita argyrosperma subsp. sororia]2.79e-126100Show/hide
Query:  MSIWASAQYRLHSHNPIWQSVDWVATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWK
        MSIWASAQYRLHSHNPIWQSVDWVATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWK
Subjt:  MSIWASAQYRLHSHNPIWQSVDWVATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWK

Query:  AGNDANFTETAYVAISDDDVTAFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRGSA
        AGNDANFTETAYVAISDDDVTAFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRGSA
Subjt:  AGNDANFTETAYVAISDDDVTAFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRGSA

XP_007140212.1 hypothetical protein PHAVU_008G093500g [Phaseolus vulgaris]5.58e-4555.56Show/hide
Query:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGR-VEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTA
        VA +DG+DEHARV+ GV+ R++ +V  H DGA  G  VEGC+G VV E V A+D AEAN++A VV+++E+LGA G  +AG+ A+  E A++A++ DDV A
Subjt:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGR-VEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTA

Query:  FDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG
          EV VGL VVEA   GPHGGD   DLL++GGAALVR   V V   HRVGD G
Subjt:  FDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG

TrEMBL top hitse value%identityAlignment
A0A0S3RUD5 Uncharacterized protein1.73e-4558.55Show/hide
Query:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDG-RVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTA
        VA +DG+DEHARV+ GV+  +I +V    DGA  G RVEGC+G VV EAV A+D AEAN++A VVE++E+LGA G  +AG+ A+  E A VA+S DDV A
Subjt:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDG-RVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTA

Query:  FDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDR
          EV VGLWVVEA   GPHGGDR  DLL+ GGAALVR   V V   H V DR
Subjt:  FDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDR

A0A2Z6NJ47 Uncharacterized protein2.26e-4151.39Show/hide
Query:  VATDDGVDEHARVLLGVSWRNIDNVRFHHD--GAV-------DGRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVA
        +A  +G++++  ++ GVS RNI++VRF+++  GAV         R++ CN  VVS+ V A+D AE +++AF+VEN E+ GA G  +AGNDANFTE+AYV 
Subjt:  VATDDGVDEHARVLLGVSWRNIDNVRFHHD--GAV-------DGRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVA

Query:  ISDDDVTAFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALV
        +++D+V AFD+VF+GLW+VEA +DGP GGDRS D L+ GGA LV
Subjt:  ISDDDVTAFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALV

A0A5N5JL98 Uncharacterized protein5.05e-4350.65Show/hide
Query:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVD--GRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVT
        VA + G+ EH RVL  +SWRNID VR H DGAV   GRVEGC+  VV + V  ++D + N+M+F+VE+LE+ GA+GSW+A ++ +FTE+A+V +S+DDV 
Subjt:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVD--GRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVT

Query:  AFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG
        A DE+ + L V+E A D P+GGD   DLL   GAALV    V V  RH + + G
Subjt:  AFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG

A5AI21 Uncharacterized protein4.90e-3951.82Show/hide
Query:  VATDDGVDEHARVLLGVSWRNIDNVRF--HHDGAVDGRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVT
        VA +DGVD++ RV  GVSW  ++++ F  H  GA  G VE  +  V+ EAV  +D AEA + A VVE+ E+LGA+G  +AG+D +  E+A ++I+++DV 
Subjt:  VATDDGVDEHARVLLGVSWRNIDNVRF--HHDGAVDGRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVT

Query:  AFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALV
          DEV VGLW+VEAA+DGP GGDR  DLL+DGGAAL+
Subjt:  AFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALV

V7B6X3 Uncharacterized protein2.70e-4555.56Show/hide
Query:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGR-VEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTA
        VA +DG+DEHARV+ GV+ R++ +V  H DGA  G  VEGC+G VV E V A+D AEAN++A VV+++E+LGA G  +AG+ A+  E A++A++ DDV A
Subjt:  VATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGR-VEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTETAYVAISDDDVTA

Query:  FDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG
          EV VGL VVEA   GPHGGD   DLL++GGAALVR   V V   HRVGD G
Subjt:  FDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATATGGGCTTCGGCCCAATACCGCCTTCACTCTCACAATCCGATCTGGCAATCCGTTGACTGGGTTGCAACGGACGATGGTGTCGACGAACACGCACGTGTCCT
CCTTGGTGTTTCCTGGCGGAATATCGACAACGTACGATTCCACCACGACGGTGCCGTCGATGGCAGGGTGGAGGGATGTAACGGACCGGTAGTTAGCGAGGCGGTGTTCG
CCTCCGACGACGCTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCGAGTCGCTCGGTGCTATTGGCAGCTGGAAGGCCGGAAACGACGCGAACTTCACGGAGACT
GCCTACGTTGCCATCTCCGACGATGACGTCACAGCTTTTGACGAAGTGTTTGTAGGCTTGTGGGTTGTCGAAGCGGCGGAGGACGGACCACACGGTGGAGACCGGAGCGT
CGATCTCTTGAACGATGGCGGAGCAGCACTGGTTCGAATCCGTAGCGTGGTTGTGGAAACGCGCCACCGCGTCGGGGACCGTGGTAGCGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATATGGGCTTCGGCCCAATACCGCCTTCACTCTCACAATCCGATCTGGCAATCCGTTGACTGGGTTGCAACGGACGATGGTGTCGACGAACACGCACGTGTCCT
CCTTGGTGTTTCCTGGCGGAATATCGACAACGTACGATTCCACCACGACGGTGCCGTCGATGGCAGGGTGGAGGGATGTAACGGACCGGTAGTTAGCGAGGCGGTGTTCG
CCTCCGACGACGCTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCGAGTCGCTCGGTGCTATTGGCAGCTGGAAGGCCGGAAACGACGCGAACTTCACGGAGACT
GCCTACGTTGCCATCTCCGACGATGACGTCACAGCTTTTGACGAAGTGTTTGTAGGCTTGTGGGTTGTCGAAGCGGCGGAGGACGGACCACACGGTGGAGACCGGAGCGT
CGATCTCTTGAACGATGGCGGAGCAGCACTGGTTCGAATCCGTAGCGTGGTTGTGGAAACGCGCCACCGCGTCGGGGACCGTGGTAGCGCGTGA
Protein sequenceShow/hide protein sequence
MSIWASAQYRLHSHNPIWQSVDWVATDDGVDEHARVLLGVSWRNIDNVRFHHDGAVDGRVEGCNGPVVSEAVFASDDAEANNMAFVVENLESLGAIGSWKAGNDANFTET
AYVAISDDDVTAFDEVFVGLWVVEAAEDGPHGGDRSVDLLNDGGAALVRIRSVVVETRHRVGDRGSA