CuGenDBv2

Gene ID	Csor.00g199630
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	30S ribosomal protein S31, chloroplastic
Genome location	Csor_Chr03:4652822..4653373
RNA-Seq Expression	Csor.00g199630
Synteny	Csor.00g199630
Gene Ontology terms	GO:0032544 - plastid translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009536 - plastid (cellular component)
InterPro domains	IPR030826 - 30S ribosomal protein IPR044695 - 30S ribosomal protein S31, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6603588.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.09e-69

100

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Query:  MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKI
        MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKI
Subjt:  MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKI

Query:  KIEIDESLFSR
        KIEIDESLFSR
Subjt:  KIEIDESLFSR

KAG7033775.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.20e-49

65.77

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Query:  MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAG---DKKTEKGKRFKHS-----------------------------------FG
        MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAG    ++ E G   +                                     F 
Subjt:  MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAG---DKKTEKGKRFKHS-----------------------------------FG

Query:  NGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR
         GNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR
Subjt:  NGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEIDESLFSR

XP_004147884.1 30S ribosomal protein S31, chloroplastic [Cucumis sativus]

3.05e-43

74.17

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Query:  MASLPFRL------PPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPSPL
        MASLPF L       PR FS SKSE LG SLRASST SLAIST S PSSIPA     GDKKTE+GKRF HS+GN    ARPRDKTKGRGTPRVP PPSP 
Subjt:  MASLPFRL------PPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPSPL

Query:  RKVKFDDDEKIKIEIDESLF
        RK KFDD+EKIKIEIDESLF
Subjt:  RKVKFDDDEKIKIEIDESLF

XP_008449316.1 PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo]

6.97e-43

71.2

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Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP
        M SLPF           L P  FS SKSETLG SLRASST SLAIST S PSSIPA     GDKKTE+GKRF HS+GN    ARPRDKTKGRGTPRVP P
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP

Query:  PSPLRKVKFDDDEKIKIEIDESLFS
        PSP RK KFDDDEKIKIEIDESLF+
Subjt:  PSPLRKVKFDDDEKIKIEIDESLFS

XP_038882305.1 30S ribosomal protein S31, chloroplastic [Benincasa hispida]

1.99e-42

71.2

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Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP
        MASLPF           L PR FS SKSETLG SLRASST SLA STTS PSSIPA     GDKKTEKGKRF  S+GN    ARPR+KTKGRGTPRVP P
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP

Query:  PSPLRKVKFDDDEKIKIEIDESLFS
        PSP RK KF+DDEKIKIEIDESLF+
Subjt:  PSPLRKVKFDDDEKIKIEIDESLFS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXY4 Uncharacterized protein

1.48e-43

74.17

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Query:  MASLPFRL------PPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPSPL
        MASLPF L       PR FS SKSE LG SLRASST SLAIST S PSSIPA     GDKKTE+GKRF HS+GN    ARPRDKTKGRGTPRVP PPSP 
Subjt:  MASLPFRL------PPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPSPL

Query:  RKVKFDDDEKIKIEIDESLF
        RK KFDD+EKIKIEIDESLF
Subjt:  RKVKFDDDEKIKIEIDESLF

A0A1S3BL51 30S ribosomal protein S31, chloroplastic

3.37e-43

71.2

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Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP
        M SLPF           L P  FS SKSETLG SLRASST SLAIST S PSSIPA     GDKKTE+GKRF HS+GN    ARPRDKTKGRGTPRVP P
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP

Query:  PSPLRKVKFDDDEKIKIEIDESLFS
        PSP RK KFDDDEKIKIEIDESLF+
Subjt:  PSPLRKVKFDDDEKIKIEIDESLFS

A0A5A7TU27 30S ribosomal protein S31

3.37e-43

71.2

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Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP
        M SLPF           L P  FS SKSETLG SLRASST SLAIST S PSSIPA     GDKKTE+GKRF HS+GN    ARPRDKTKGRGTPRVP P
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP

Query:  PSPLRKVKFDDDEKIKIEIDESLFS
        PSP RK KFDDDEKIKIEIDESLF+
Subjt:  PSPLRKVKFDDDEKIKIEIDESLFS

A0A6J1EV33 30S ribosomal protein S31, chloroplastic-like

1.41e-41

72.22

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Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP
        MASLPF           L PR FS SKSETLG SLR S TG+   S TS PSSIPA     GDKKTEKGKRFKHSFGN    ARPRDKTKGRGTPRVP P
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP

Query:  PSPLRKVKFDDDEKIKIEIDESLFSR
        PSP RK KFDDDEKIKIEIDESLFSR
Subjt:  PSPLRKVKFDDDEKIKIEIDESLFSR

A0A6J1HRX4 30S ribosomal protein S31, chloroplastic

1.41e-41

72.22

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Query:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP
        MASLPF           L PR FS SKSETLG SLR S TG+   S TS PSSIPA     GDKKTEKGKRFKHSFGN    ARPRDKTKGRGTPRVP P
Subjt:  MASLPF----------RLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPA-----GDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIP

Query:  PSPLRKVKFDDDEKIKIEIDESLFSR
        PSP RK KFDDDEKIKIEIDESLFSR
Subjt:  PSPLRKVKFDDDEKIKIEIDESLFSR

SwissProt top hits

e value

%identity

Alignment

O80439 30S ribosomal protein S31, chloroplastic

5.6e-21

56.1

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Query:  MASLPFRLPPR--------SFSISKSETLGISLRASSTGSLAISTTSCPSSIP-----AGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPS
        MASL    PPR          S S SET G+SL +  T   ++ST+S  SSIP      GD+KT KGKRF HSFGN    ARPR+K+KGRG  RVP+PP+
Subjt:  MASLPFRLPPR--------SFSISKSETLGISLRASSTGSLAISTTSCPSSIP-----AGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPS

Query:  PLRKVKFDDDEKIKIEIDESLFS
        P RK KF++DEKIKI+IDESLFS
Subjt:  PLRKVKFDDDEKIKIEIDESLFS

P47910 30S ribosomal protein S31, chloroplastic

3.2e-08

49.38

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Query:  SFSISKSETL-GISLRASSTGSLAISTTSCPSSIP-----AGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPP
        SFS S S+++ G+SL +  T SL+ S ++ P ++P      GD+KT KGKRF HSFGN    ARP++K KGRG P+ PI P
Subjt:  SFSISKSETL-GISLRASSTGSLAISTTSCPSSIP-----AGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPP

Arabidopsis top hits

e value

%identity

Alignment

AT2G38140.1 plastid-specific ribosomal protein 4

4.0e-22

56.1

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Query:  MASLPFRLPPR--------SFSISKSETLGISLRASSTGSLAISTTSCPSSIP-----AGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPS
        MASL    PPR          S S SET G+SL +  T   ++ST+S  SSIP      GD+KT KGKRF HSFGN    ARPR+K+KGRG  RVP+PP+
Subjt:  MASLPFRLPPR--------SFSISKSETLGISLRASSTGSLAISTTSCPSSIP-----AGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPS

Query:  PLRKVKFDDDEKIKIEIDESLFS
        P RK KF++DEKIKI+IDESLFS
Subjt:  PLRKVKFDDDEKIKIEIDESLFS

Sequences

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CDS sequence

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ATGGCTTCTCTTCCTTTCAGACTGCCTCCTCGTTCTTTCTCCATCTCCAAATCTGAAACCCTAGGAATATCTCTGCGTGCTTCGTCTACTGGTTCTCTCGCAATC
TCTACAACTTCGTGTCCTTCTTCAATTCCTGCTGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAAGCACTCGTTCGGAAATGGGAATGATCAGGCAAGGCCT
CGGGACAAGACGAAAGGGAGAGGGACGCCGAGAGTACCAATTCCTCCTTCTCCGCTTAGGAAGGTTAAATTTGATGACGATGAGAAAATCAAGATCGAGATTGAT
GAGTCTCTTTTCTCTAGATAA

mRNA sequence

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Protein sequence

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MASLPFRLPPRSFSISKSETLGISLRASSTGSLAISTTSCPSSIPAGDKKTEKGKRFKHSFGNGNDQARPRDKTKGRGTPRVPIPPSPLRKVKFDDDEKIKIEID
ESLFSR

Csor.00g199630 (gene) of Silver-seed gourd (wild; sororia) v1 genome