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Csor.00g199660 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g199660
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionClathrin light chain
Genome locationCsor_Chr03:4663800..4664051
RNA-Seq ExpressionCsor.00g199660
SyntenyCsor.00g199660
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0048268 - clathrin coat assembly (biological process)
GO:0072583 - clathrin-dependent endocytosis (biological process)
GO:0030130 - clathrin coat of trans-Golgi network vesicle (cellular component)
GO:0030132 - clathrin coat of coated pit (cellular component)
GO:0005198 - structural molecule activity (molecular function)
GO:0032050 - clathrin heavy chain binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603591.1 hypothetical protein SDJN03_04200, partial [Cucurbita argyrosperma subsp. sororia]1.32e-50100Show/hide
Query:  MTAPADSNVAFVSMIRILFYLRRRVCRRRLVIDLRQPAVNQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        MTAPADSNVAFVSMIRILFYLRRRVCRRRLVIDLRQPAVNQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
Subjt:  MTAPADSNVAFVSMIRILFYLRRRVCRRRLVIDLRQPAVNQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
KAG7027391.1 Clathrin light chain 2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.53e-1072.73Show/hide
Query:  NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        NQGDD+  T P+NFSA GG+SS SPEQN +GFDG FGESD PIL
Subjt:  NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
XP_008449287.1 PREDICTED: clathrin light chain 2-like [Cucumis melo]1.53e-1078.57Show/hide
Query:  GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        GDDL  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Subjt:  GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
XP_023517245.1 clathrin light chain 2-like [Cucurbita pepo subsp. pepo]2.13e-1175Show/hide
Query:  NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        NQGDD+  T P+NFSADGG+SS SPEQN +GFDG FGESD PIL
Subjt:  NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
XP_038882671.1 clathrin light chain 2-like [Benincasa hispida]1.21e-1480.43Show/hide
Query:  AVNQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        A NQGDDL  T P+NFSADGG SSFSP+QNGKGFDG +GESDGPIL
Subjt:  AVNQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
TrEMBL top hitse value%identityAlignment
A0A0A0KZX1 Clathrin light chain1.42e-1072.73Show/hide
Query:  NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        +QGD +  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Subjt:  NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
A0A1S3BLP9 Clathrin light chain7.42e-1178.57Show/hide
Query:  GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        GDDL  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Subjt:  GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
A0A5A7TPG9 Clathrin light chain7.42e-1178.57Show/hide
Query:  GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        GDDL  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Subjt:  GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
A0A5D3B8W6 Clathrin light chain7.42e-1178.57Show/hide
Query:  GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        GDDL  T P+NFSA GG SSFS +QNGKGFDG FGESDGPIL
Subjt:  GDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
A0A6J1EVB3 Clathrin light chain1.02e-1072.73Show/hide
Query:  NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
        NQGDD+  T P+NFSA GG+SS SPEQN +GFDG FGESD PIL
Subjt:  NQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGCTCCAGCGGATTCGAACGTCGCCTTTGTCTCAATGATTCGAATCCTTTTCTACCTTCGAAGACGAGTCTGCCGTCGCCGACTCGTCATCGATCTTCGTCAACC
AGCCGTTAACCAGGGAGACGACCTGCTGCTGACTTCGCCTTCGAATTTCTCGGCCGATGGGGGAATCTCTAGTTTCTCACCGGAGCAGAACGGGAAGGGCTTTGATGGAG
ATTTTGGCGAATCGGATGGCCCGATCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGCTCCAGCGGATTCGAACGTCGCCTTTGTCTCAATGATTCGAATCCTTTTCTACCTTCGAAGACGAGTCTGCCGTCGCCGACTCGTCATCGATCTTCGTCAACC
AGCCGTTAACCAGGGAGACGACCTGCTGCTGACTTCGCCTTCGAATTTCTCGGCCGATGGGGGAATCTCTAGTTTCTCACCGGAGCAGAACGGGAAGGGCTTTGATGGAG
ATTTTGGCGAATCGGATGGCCCGATCCTCTAA
Protein sequenceShow/hide protein sequence
MTAPADSNVAFVSMIRILFYLRRRVCRRRLVIDLRQPAVNQGDDLLLTSPSNFSADGGISSFSPEQNGKGFDGDFGESDGPIL