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Csor.00g200760 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g200760
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionZinc finger CCCH domain-containing protein
Genome locationCsor_Chr03:5189159..5198971
RNA-Seq ExpressionCsor.00g200760
SyntenyCsor.00g200760
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603700.1 Zinc finger CCCH domain-containing protein 21, partial [Cucurbita argyrosperma subsp. sororia]2.18e-296100Show/hide
Query:  MLSLTEPYSAFKGSNMDITYTALQREKSCSDFLVPCSFCTSAGLLVEYLILPIIPFNFVYDMLELSDVPPAGKTSSPNSSFKSLELQERLFELQPDEYSK
        MLSLTEPYSAFKGSNMDITYTALQREKSCSDFLVPCSFCTSAGLLVEYLILPIIPFNFVYDMLELSDVPPAGKTSSPNSSFKSLELQERLFELQPDEYSK
Subjt:  MLSLTEPYSAFKGSNMDITYTALQREKSCSDFLVPCSFCTSAGLLVEYLILPIIPFNFVYDMLELSDVPPAGKTSSPNSSFKSLELQERLFELQPDEYSK

Query:  CLLSCRRRFCLPSPTRLTPSVNVRFLLTVSSGDRYDQTVQYQIFDAAEATIEKHEQEQNCGELCPEHQAIGSAQSRSDENGREGLQVILGCCGEETIWLV
        CLLSCRRRFCLPSPTRLTPSVNVRFLLTVSSGDRYDQTVQYQIFDAAEATIEKHEQEQNCGELCPEHQAIGSAQSRSDENGREGLQVILGCCGEETIWLV
Subjt:  CLLSCRRRFCLPSPTRLTPSVNVRFLLTVSSGDRYDQTVQYQIFDAAEATIEKHEQEQNCGELCPEHQAIGSAQSRSDENGREGLQVILGCCGEETIWLV

Query:  LVTPKCRQGLSLWACSICWHAKITKTTSTLMTPELYMQWKKKKFAEREACFAALAERASNDRLSDRQWQWHSICWHSINDLLLEKGLPLTIMEGLYIRRL
        LVTPKCRQGLSLWACSICWHAKITKTTSTLMTPELYMQWKKKKFAEREACFAALAERASNDRLSDRQWQWHSICWHSINDLLLEKGLPLTIMEGLYIRRL
Subjt:  LVTPKCRQGLSLWACSICWHAKITKTTSTLMTPELYMQWKKKKFAEREACFAALAERASNDRLSDRQWQWHSICWHSINDLLLEKGLPLTIMEGLYIRRL

Query:  LCSLDVFRGYGEASFYACPLEKDFQSFCKQPSDNPNRCLPQVVGVSKADIGQKGMWKKQQNKIEEDLAVNIMFRWDSVFNNATVDEHGDVC
        LCSLDVFRGYGEASFYACPLEKDFQSFCKQPSDNPNRCLPQVVGVSKADIGQKGMWKKQQNKIEEDLAVNIMFRWDSVFNNATVDEHGDVC
Subjt:  LCSLDVFRGYGEASFYACPLEKDFQSFCKQPSDNPNRCLPQVVGVSKADIGQKGMWKKQQNKIEEDLAVNIMFRWDSVFNNATVDEHGDVC

KAG7033878.1 hypothetical protein SDJN02_03603, partial [Cucurbita argyrosperma subsp. argyrosperma]2.45e-3884.42Show/hide
Query:  FYACPLEKDFQSFCKQPSDNPNRCLPQVVGVSKADIGQKGMWKKQQNKIEEDLAVNIMFRWDSVFNNATVDEHGDVC
        F   PL++  ++F   PSDNPNRCLPQVVGVSKADIGQKGMWKKQQNKIEEDLAVNIMFRWDSVFNNATVDEHGDVC
Subjt:  FYACPLEKDFQSFCKQPSDNPNRCLPQVVGVSKADIGQKGMWKKQQNKIEEDLAVNIMFRWDSVFNNATVDEHGDVC

PQP92987.1 zinc finger CCCH domain-containing protein 11-like [Prunus yedoensis var. nudiflora]6.64e-0667.35Show/hide
Query:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
         AK+T  TST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

TQE13205.1 hypothetical protein C1H46_001289 [Malus baccata]1.80e-0663.27Show/hide
Query:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        + ++  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

XP_008337225.2 zinc finger CCCH domain-containing protein 11-like [Malus domestica]1.80e-0663.27Show/hide
Query:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        + ++  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

TrEMBL top hitse value%identityAlignment
A0A314XPV8 Zinc finger CCCH domain-containing protein 11-like3.22e-0667.35Show/hide
Query:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
         AK+T  TST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

A0A498K165 Uncharacterized protein8.71e-0763.27Show/hide
Query:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        + ++  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

A0A540NQA2 Uncharacterized protein8.71e-0763.27Show/hide
Query:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        + ++  TTST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

A0A5K1D9I2 DFRP_C domain-containing protein (Fragment)1.24e-0667.44Show/hide
Query:  KITKTTSTLMTPELYMQWKKKKFAEREACFAAL-AERASNDRL
        + T TTST +TP+L+MQWKKKK  EREA  AAL AERA NDR+
Subjt:  KITKTTSTLMTPELYMQWKKKKFAEREACFAAL-AERASNDRL

A0A6P5REB8 zinc finger CCCH domain-containing protein 21-like isoform X13.67e-0667.35Show/hide
Query:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
         AK+T  TST MTPEL+MQWKKKK AER+A  AA +AERA NDR+S R+
Subjt:  HAKITKTTSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

SwissProt top hitse value%identityAlignment
Q0JHZ2 Zinc finger CCCH domain-containing protein 116.8e-0561.9Show/hide
Query:  TSTLMTPELYMQWKKKKFAEREACFAAL-AERASNDRLSDRQ
        T+T MT +L+M+WK+KK  EREA  AAL AERA NDR+S R+
Subjt:  TSTLMTPELYMQWKKKKFAEREACFAAL-AERASNDRLSDRQ

Q9SK74 Zinc finger CCCH domain-containing protein 212.3e-0561.9Show/hide
Query:  TSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        T+T MTP L+M+WK+KK AER+A  AA  AERA NDR+S R+
Subjt:  TSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ

Arabidopsis top hitse value%identityAlignment
AT2G20280.1 Zinc finger C-x8-C-x5-C-x3-H type family protein1.7e-0661.9Show/hide
Query:  TSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ
        T+T MTP L+M+WK+KK AER+A  AA  AERA NDR+S R+
Subjt:  TSTLMTPELYMQWKKKKFAEREACFAA-LAERASNDRLSDRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATCTCTGACCGAACCATATTCAGCTTTCAAAGGTTCTAACATGGACATTACTTATACTGCTTTGCAAAGAGAAAAGTCTTGCAGTGATTTCCTTGTGCCTTGCAG
CTTCTGTACATCTGCTGGCCTCCTAGTGGAGTACTTAATCCTTCCAATAATTCCTTTCAACTTTGTATATGACATGTTAGAGCTTTCTGATGTTCCTCCTGCAGGAAAAA
CCTCAAGCCCGAATTCGTCTTTCAAGAGTTTAGAACTGCAAGAACGTTTATTTGAGCTTCAACCTGATGAATACAGTAAATGCTTACTCTCATGCAGGAGAAGGTTCTGT
TTGCCTTCTCCAACACGTCTTACTCCATCAGTGAACGTCCGATTCTTGCTCACTGTCTCATCCGGAGATCGATACGATCAGACTGTCCAATATCAGATATTCGACGCCGC
CGAAGCAACGATTGAAAAACATGAACAGGAGCAAAACTGTGGAGAACTATGTCCAGAGCATCAAGCAATCGGTTCAGCTCAGTCCCGATCAGATGAAAATGGCCGCGAAG
GTTTGCAAGTAATTCTTGGATGTTGTGGAGAAGAAACAATATGGTTGGTTTTGGTTACGCCCAAATGTAGGCAAGGACTGTCATTATGGGCGTGCTCTATTTGCTGGCAT
GCCAAGATAACTAAAACAACATCAACCCTCATGACTCCTGAATTATACATGCAATGGAAGAAGAAAAAGTTTGCAGAAAGAGAAGCTTGTTTTGCTGCACTGGCAGAAAG
AGCCTCGAATGATCGTCTGAGTGACCGCCAATGGCAATGGCACTCCATTTGTTGGCACAGTATTAATGATCTTTTACTAGAGAAGGGTCTGCCACTGACAATAATGGAAG
GCTTATATATTCGAAGGCTGCTCTGTTCTCTTGACGTTTTTCGTGGTTATGGAGAAGCATCATTTTATGCTTGTCCCCTTGAAAAGGACTTCCAAAGCTTTTGCAAGCAG
CCATCAGACAACCCTAATCGCTGTCTTCCTCAGGTTGTCGGAGTAAGTAAAGCTGATATTGGGCAAAAGGGAATGTGGAAAAAACAGCAGAACAAGATTGAAGAAGATCT
TGCAGTTAACATTATGTTCAGATGGGACTCAGTTTTCAACAATGCCACAGTTGATGAACATGGAGATGTCTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTATCTCTGACCGAACCATATTCAGCTTTCAAAGGTTCTAACATGGACATTACTTATACTGCTTTGCAAAGAGAAAAGTCTTGCAGTGATTTCCTTGTGCCTTGCAG
CTTCTGTACATCTGCTGGCCTCCTAGTGGAGTACTTAATCCTTCCAATAATTCCTTTCAACTTTGTATATGACATGTTAGAGCTTTCTGATGTTCCTCCTGCAGGAAAAA
CCTCAAGCCCGAATTCGTCTTTCAAGAGTTTAGAACTGCAAGAACGTTTATTTGAGCTTCAACCTGATGAATACAGTAAATGCTTACTCTCATGCAGGAGAAGGTTCTGT
TTGCCTTCTCCAACACGTCTTACTCCATCAGTGAACGTCCGATTCTTGCTCACTGTCTCATCCGGAGATCGATACGATCAGACTGTCCAATATCAGATATTCGACGCCGC
CGAAGCAACGATTGAAAAACATGAACAGGAGCAAAACTGTGGAGAACTATGTCCAGAGCATCAAGCAATCGGTTCAGCTCAGTCCCGATCAGATGAAAATGGCCGCGAAG
GTTTGCAAGTAATTCTTGGATGTTGTGGAGAAGAAACAATATGGTTGGTTTTGGTTACGCCCAAATGTAGGCAAGGACTGTCATTATGGGCGTGCTCTATTTGCTGGCAT
GCCAAGATAACTAAAACAACATCAACCCTCATGACTCCTGAATTATACATGCAATGGAAGAAGAAAAAGTTTGCAGAAAGAGAAGCTTGTTTTGCTGCACTGGCAGAAAG
AGCCTCGAATGATCGTCTGAGTGACCGCCAATGGCAATGGCACTCCATTTGTTGGCACAGTATTAATGATCTTTTACTAGAGAAGGGTCTGCCACTGACAATAATGGAAG
GCTTATATATTCGAAGGCTGCTCTGTTCTCTTGACGTTTTTCGTGGTTATGGAGAAGCATCATTTTATGCTTGTCCCCTTGAAAAGGACTTCCAAAGCTTTTGCAAGCAG
CCATCAGACAACCCTAATCGCTGTCTTCCTCAGGTTGTCGGAGTAAGTAAAGCTGATATTGGGCAAAAGGGAATGTGGAAAAAACAGCAGAACAAGATTGAAGAAGATCT
TGCAGTTAACATTATGTTCAGATGGGACTCAGTTTTCAACAATGCCACAGTTGATGAACATGGAGATGTCTGTTAA
Protein sequenceShow/hide protein sequence
MLSLTEPYSAFKGSNMDITYTALQREKSCSDFLVPCSFCTSAGLLVEYLILPIIPFNFVYDMLELSDVPPAGKTSSPNSSFKSLELQERLFELQPDEYSKCLLSCRRRFC
LPSPTRLTPSVNVRFLLTVSSGDRYDQTVQYQIFDAAEATIEKHEQEQNCGELCPEHQAIGSAQSRSDENGREGLQVILGCCGEETIWLVLVTPKCRQGLSLWACSICWH
AKITKTTSTLMTPELYMQWKKKKFAEREACFAALAERASNDRLSDRQWQWHSICWHSINDLLLEKGLPLTIMEGLYIRRLLCSLDVFRGYGEASFYACPLEKDFQSFCKQ
PSDNPNRCLPQVVGVSKADIGQKGMWKKQQNKIEEDLAVNIMFRWDSVFNNATVDEHGDVC