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Csor.00g201610 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g201610
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionDynein light chain
Genome locationCsor_Chr06:1404383..1404737
RNA-Seq ExpressionCsor.00g201610
SyntenyCsor.00g201610
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596387.1 hypothetical protein SDJN03_09567, partial [Cucurbita argyrosperma subsp. sororia]3.07e-63100Show/hide
Query:  MALPWLIKHSINTKFPTLNPLHVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA
        MALPWLIKHSINTKFPTLNPLHVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA
Subjt:  MALPWLIKHSINTKFPTLNPLHVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA

KAG7027933.1 putative receptor protein kinase ZmPK1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.37e-36100Show/hide
Query:  RLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA
        RLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA
Subjt:  RLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA

KGN58830.1 hypothetical protein Csa_001625 [Cucumis sativus]4.51e-2870.97Show/hide
Query:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG
        H    R DEAYGPAW CV GKAFGGCITH+CG++I FHVDTMEFL+FKD  DCFK+V+ T+G
Subjt:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG

XP_008442502.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]2.60e-2770.97Show/hide
Query:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG
        H    R DEAYGPAW CV GKAFGGCITH+CG+FI FHVDTMEFL+FKD  DC K+V+ T+G
Subjt:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG

XP_023540066.1 dynein light chain-like [Cucurbita pepo subsp. pepo]2.50e-3995.24Show/hide
Query:  RLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA
        RLDEAYGPAWQCVVGKAFGGCITHVCGTFI FHVDTMEFLIFKDATDCFK++QHTLGGLPHKA
Subjt:  RLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA

TrEMBL top hitse value%identityAlignment
A0A061ERU3 Dynein light chain1.41e-2057.81Show/hide
Query:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGL
        H    + DEAYGPAW CV GK FG CI+H+CG+FI FHV+ MEFLIFKD +D  +T +  +G L
Subjt:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGL

A0A0A0LA26 Dynein light chain2.18e-2870.97Show/hide
Query:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG
        H    R DEAYGPAW CV GKAFGGCITH+CG++I FHVDTMEFL+FKD  DCFK+V+ T+G
Subjt:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG

A0A1S3B5U2 Dynein light chain1.26e-2770.97Show/hide
Query:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG
        H    R DEAYGPAW CV GKAFGGCITH+CG+FI FHVDTMEFL+FKD  DC K+V+ T+G
Subjt:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG

A0A6J1CWC6 Dynein light chain2.40e-2575.44Show/hide
Query:  RLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG
        R DEAYGPAW CVVGKAFGGCITH+CG+FI FHVD MEFLIFKD  D  K+++ TLG
Subjt:  RLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLG

A0A6P6AMV8 Dynein light chain2.00e-2059.38Show/hide
Query:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGL
        H    + DEAYG AW CVVGK FG CI+H+CGTFI FHV+ MEFLIFKD  D  +T +  +G L
Subjt:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGL

SwissProt top hitse value%identityAlignment
Q6BZF8 Dynein light chain 1, cytoplasmic2.6e-0547.62Show/hide
Query:  LDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK
        LD+ YG  W  +VGK+FG  +TH  G F  F++  + FLIFK
Subjt:  LDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK

Q86A88 Dynein light chain, cytoplasmic3.4e-0538.3Show/hide
Query:  VSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK
        +     D+ Y P W C+VGK+FG  +TH    FI F+++    L+FK
Subjt:  VSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK

Q94748 Probable dynein light chain1.7e-0446.34Show/hide
Query:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK
        D  Y P W C+VGK FG  +TH    FI F++    FL+FK
Subjt:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK

Q94758 Dynein light chain4.5e-0546.34Show/hide
Query:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK
        D  Y P W C+VG+ FG  +TH    FI F++D   FL+FK
Subjt:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK

Q9UR05 Dynein light chain 1, cytoplasmic7.7e-0543.9Show/hide
Query:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK
        D+ + P W C+VG+ FG  +TH    FI F++ T+ FL+FK
Subjt:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein2.4e-0944.23Show/hide
Query:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATD
        H      D AYGPAW C+VG +FG  +TH  G F+ F +D +  L+FK A +
Subjt:  HVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATD

AT1G52240.2 RHO guanyl-nucleotide exchange factor 113.1e-0959.09Show/hide
Query:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDAT
        DE YG  WQCVVG  FG   TH  GTFI F ++T++FLIFK A+
Subjt:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDAT

AT3G16120.1 Dynein light chain type 1 family protein4.8e-1063.64Show/hide
Query:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDAT
        DE YG  WQCVVG  FG   TH  GTFI FH+ T+ FLIFK AT
Subjt:  DEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDAT

AT5G20110.1 Dynein light chain type 1 family protein2.6e-0841.07Show/hide
Query:  KFPTLNPLHVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK
        KF + +         D+ YGPAW C+VG +FG  +TH  G FI F +D +  L+FK
Subjt:  KFPTLNPLHVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTGCCTTGGCTTATAAAGCACTCGATCAACACGAAGTTTCCGACTCTCAATCCATTGCACGTTTCATCAAACAGGTTGGACGAAGCTTATGGGCCGGCATGGCA
GTGTGTGGTGGGCAAAGCGTTTGGAGGCTGCATTACCCATGTATGTGGTACCTTCATCTCCTTCCATGTGGATACCATGGAGTTCCTCATCTTCAAAGACGCAACAGACT
GCTTCAAAACCGTTCAACACACCCTTGGAGGGCTTCCCCACAAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTGCCTTGGCTTATAAAGCACTCGATCAACACGAAGTTTCCGACTCTCAATCCATTGCACGTTTCATCAAACAGGTTGGACGAAGCTTATGGGCCGGCATGGCA
GTGTGTGGTGGGCAAAGCGTTTGGAGGCTGCATTACCCATGTATGTGGTACCTTCATCTCCTTCCATGTGGATACCATGGAGTTCCTCATCTTCAAAGACGCAACAGACT
GCTTCAAAACCGTTCAACACACCCTTGGAGGGCTTCCCCACAAAGCTTAA
Protein sequenceShow/hide protein sequence
MALPWLIKHSINTKFPTLNPLHVSSNRLDEAYGPAWQCVVGKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA