; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Csor.00g212370 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g212370
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCsor_Chr17:5468106..5468784
RNA-Seq ExpressionCsor.00g212370
SyntenyCsor.00g212370
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575311.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.69e-99100Show/hide
Query:  MQMQCAMELVVSLLWSQGQRLLCLDWPTSSLLLPSPKPYRNQVLEPFNTNHFQYRSLSSSKYSVADLFILRISSISSNGALSALISAIHPPHILKSSVSS
        MQMQCAMELVVSLLWSQGQRLLCLDWPTSSLLLPSPKPYRNQVLEPFNTNHFQYRSLSSSKYSVADLFILRISSISSNGALSALISAIHPPHILKSSVSS
Subjt:  MQMQCAMELVVSLLWSQGQRLLCLDWPTSSLLLPSPKPYRNQVLEPFNTNHFQYRSLSSSKYSVADLFILRISSISSNGALSALISAIHPPHILKSSVSS

Query:  VAPDTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQEIRHEV
        VAPDTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQEIRHEV
Subjt:  VAPDTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQEIRHEV

KAG7013843.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]9.89e-1490.7Show/hide
Query:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        D  +RSGKFDAALEILDHMEELGTSLELNTYNSVLVALV+KNQ
Subjt:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

XP_022992119.1 pentatricopeptide repeat-containing protein At4g01570 [Cucurbita maxima]9.89e-1490.7Show/hide
Query:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        D  +RSGKFDAALEILDHMEELGTSLELNTYNSVLVALV+KNQ
Subjt:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

XP_023549441.1 pentatricopeptide repeat-containing protein At4g01570 [Cucurbita pepo subsp. pepo]9.89e-1490.7Show/hide
Query:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        D  +RSGKFDAALEILDHMEELGTSLELNTYNSVLVALV+KNQ
Subjt:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

XP_031743694.1 pentatricopeptide repeat-containing protein At4g01570 isoform X2 [Cucumis sativus]1.56e-1283.72Show/hide
Query:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        D  +RSGK+DAALEILDHME+LGTSLELNTYNSVLVAL++KNQ
Subjt:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

TrEMBL top hitse value%identityAlignment
A0A0A0KFG9 Uncharacterized protein7.73e-1383.72Show/hide
Query:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        D  +RSGK+DAALEILDHME+LGTSLELNTYNSVLVAL++KNQ
Subjt:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

A0A1S3CBH7 pentatricopeptide repeat-containing protein At4g015707.73e-1383.72Show/hide
Query:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        D  +RSGK+DAALEILDHME+LGTSLELNTYNSVLVAL++KNQ
Subjt:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

A0A5A7TE47 Pentatricopeptide repeat-containing protein7.73e-1383.72Show/hide
Query:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        D  +RSGK+DAALEILDHME+LGTSLELNTYNSVLVAL++KNQ
Subjt:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

A0A6J1EPT7 pentatricopeptide repeat-containing protein At4g015707.72e-1386.05Show/hide
Query:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        D  +RSGKFD AL+ILDHMEELGTSLELNTYNSVLVALV+KNQ
Subjt:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

A0A6J1JWP1 pentatricopeptide repeat-containing protein At4g015704.79e-1490.7Show/hide
Query:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        D  +RSGKFDAALEILDHMEELGTSLELNTYNSVLVALV+KNQ
Subjt:  DTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

SwissProt top hitse value%identityAlignment
Q8VZE4 Pentatricopeptide repeat-containing protein At4g015708.2e-0749.06Show/hide
Query:  LKSSVSSVAPDTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        L  +++ +  D+ +RSGKF++AL +LD+MEELG  L  + Y+SVL+ALVKK++
Subjt:  LKSSVSSVAPDTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ

Arabidopsis top hitse value%identityAlignment
AT4G01570.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.8e-0849.06Show/hide
Query:  LKSSVSSVAPDTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ
        L  +++ +  D+ +RSGKF++AL +LD+MEELG  L  + Y+SVL+ALVKK++
Subjt:  LKSSVSSVAPDTSMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATGCAATGCGCCATGGAATTGGTGGTTTCGTTGCTATGGAGTCAAGGGCAACGCCTTCTCTGTCTCGATTGGCCGACCTCCTCCTTGTTGCTTCCATCA
CCAAAACCCTATCGGAATCAGGTACTCGAACCCTTCAACACCAATCACTTTCAATATCGGAGCCTCTCCTCCTCCAAATACTCCGTAGCAGATCTGTTCATCCTT
CGAATAAGCTCGATTTCTTCAAATGGTGCTCTCTCAGCCCTAATTTCAGCCATTCACCCTCCACATATTCTCAAATCTTCCGTATCCTCTGTCGCTCCGGATACC
TCCATGAGGTCTGGTAAATTCGATGCTGCTCTTGAAATTTTAGACCATATGGAAGAGTTAGGGACTAGCTTGGAACTTAACACGTACAACTCTGTTCTCGTCGCT
CTCGTCAAGAAAAACCAGGAAATCAGACATGAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAATGCAATGCGCCATGGAATTGGTGGTTTCGTTGCTATGGAGTCAAGGGCAACGCCTTCTCTGTCTCGATTGGCCGACCTCCTCCTTGTTGCTTCCATCA
CCAAAACCCTATCGGAATCAGGTACTCGAACCCTTCAACACCAATCACTTTCAATATCGGAGCCTCTCCTCCTCCAAATACTCCGTAGCAGATCTGTTCATCCTT
CGAATAAGCTCGATTTCTTCAAATGGTGCTCTCTCAGCCCTAATTTCAGCCATTCACCCTCCACATATTCTCAAATCTTCCGTATCCTCTGTCGCTCCGGATACC
TCCATGAGGTCTGGTAAATTCGATGCTGCTCTTGAAATTTTAGACCATATGGAAGAGTTAGGGACTAGCTTGGAACTTAACACGTACAACTCTGTTCTCGTCGCT
CTCGTCAAGAAAAACCAGGAAATCAGACATGAGGTTTGA
Protein sequenceShow/hide protein sequence
MQMQCAMELVVSLLWSQGQRLLCLDWPTSSLLLPSPKPYRNQVLEPFNTNHFQYRSLSSSKYSVADLFILRISSISSNGALSALISAIHPPHILKSSVSSVAPDT
SMRSGKFDAALEILDHMEELGTSLELNTYNSVLVALVKKNQEIRHEV