CuGenDBv2

Gene ID	Csor.00g212740
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Histone H3
Genome location	Csor_Chr17:5937117..5937753
RNA-Seq Expression	Csor.00g212740
Synteny	Csor.00g212740
Gene Ontology terms	GO:0000786 - nucleosome (cellular component) GO:0005634 - nucleus (cellular component) GO:0010369 - chromocenter (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR000164 - Histone H3/CENP-A IPR007125 - Histone H2A/H2B/H3 IPR009072 - Histone-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA8519731.1 hypothetical protein F0562_013987 [Nyssa sinensis]

1.16e-83

98.53

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSF
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG  F
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSF

KAB1211929.1 histone H3.2 [Morella rubra]

2.36e-83

97.1

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSFGF
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG    F
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSFGF

KAG6575346.1 histone H3.2, partial [Cucurbita argyrosperma subsp. sororia]

1.77e-94

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSFGFSGFLLLLPR
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSFGFSGFLLLLPR
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSFGFSGFLLLLPR

NP_001131276.1 histone H3.2 [Zea mays]

2.35e-83

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

VAH21921.1 unnamed protein product [Triticum turgidum subsp. durum]

9.31e-84

92.47

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGN-SFGFSGFLLLL
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG  ++ F G L+++
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGN-SFGFSGFLLLL

TrEMBL top hits

e value

%identity

Alignment

A0A1U7XR83 Histone H3

1.14e-83

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

A0A287ES99 Histone H3

2.99e-84

97.81

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSFG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG S G
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSFG

A0A287FSP8 Histone H3

3.31e-84

97.81

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSFG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR N FG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSFG

A0A446K9K4 Histone domain-containing protein

4.51e-84

92.47

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGN-SFGFSGFLLLL
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG  ++ F G L+++
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGN-SFGFSGFLLLL

A0A5J4ZRM3 Histone H3

5.64e-84

98.53

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSF
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG  F
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGNSF

SwissProt top hits

e value

%identity

Alignment

P59226 Histone H3.2

2.9e-65

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

P69246 Histone H3.2

2.9e-65

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

Q6LBE3 Histone H3.2

2.9e-65

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

Q6LCK1 Histone H3.2

2.9e-65

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

Q71T45 Histone H3.2

2.9e-65

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

Arabidopsis top hits

e value

%identity

Alignment

AT1G09200.1 Histone superfamily protein

2.0e-66

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

AT3G27360.1 Histone superfamily protein

2.0e-66

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

AT5G10390.1 Histone superfamily protein

2.0e-66

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

AT5G10400.1 Histone superfamily protein

2.0e-66

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

AT5G65360.1 Histone superfamily protein

2.0e-66

100

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTCGCACCAAGCAAACAGCCCGAAAGTCCACCGGCGGTAAGGCTCCTCGTAAGCAATTGGCGACGAAGGCTGCTCGGAAATCGGCTCCGGCGACCGGAGGAGTCAA
GAAGCCGCACAGATTCCGTCCAGGGACTGTTGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCACCGAGCTTCTTATCCGAAAGCTTCCGTTTCAGCGGCTGGTTAGAG
AAATCGCTCAGGATTTCAAGACCGATCTCCGATTCCAGAGTAGCGCCGTTGCGGCGTTGCAGGAGGCGGCGGAGGCCTACCTCGTCGGATTGTTCGAAGATACTAACCTG
TGTGCGATTCATGCTAAGAGAGTCACGATTATGCCTAAGGATATTCAATTGGCCAGGCGGATTAGAGGTAACTCTTTTGGCTTCTCTGGATTTTTGTTGCTCCTACCAAG
ATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL
CAIHAKRVTIMPKDIQLARRIRGNSFGFSGFLLLLPR

Csor.00g212740 (gene) of Silver-seed gourd (wild; sororia) v1 genome