CuGenDBv2

Gene ID	Csor.00g217870
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ribosome biogenesis protein
Genome location	Csor_Chr10:1809565..1811315
RNA-Seq Expression	Csor.00g217870
Synteny	Csor.00g217870
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589685.1 hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sororia]

2.02e-98

100

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT

Query:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

KAG7023365.1 hypothetical protein SDJN02_14390 [Cucurbita argyrosperma subsp. argyrosperma]

2.24e-89

91.62

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK----------NKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK           KLRRRKR LKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK----------NKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
         LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

XP_022922102.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata]

4.75e-97

98.73

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK KLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT

Query:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLNHPAFQADPLGAIHLHL+STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

XP_022987345.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima]

6.75e-97

98.73

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK KLRRRKRDLKAFDLTALSEFLPGLK PKQKTSDTELKVNCKSRLKFVLKETKQMGT
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT

Query:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]

1.36e-96

98.73

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK KLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT

Query:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLNHPAFQADPLGAIHLHLESTQPVEE KKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

1.55e-77

82.28

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKL-RRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMG
        MGKP SRSD KSKAERKFEKK+QFYERVGETI TLNAQK+ITK K  RRRKRDLKAFDL+ LSEFLPGL+A KQK S  ELK+NCKSRLKF+LKE KQMG
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKL-RRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMG

Query:  TVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        TVLNHP FQADPL A+ LHLE TQP+EE KKKK N+NGSKKRKEKKSKA+AKPSSMEM
Subjt:  TVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

A0A6J1CYW4 putative ribosome biogenesis protein slx9-like isoform X1

9.91e-76

80.89

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK--NKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQM
        MGKP SRSDSKSKAERKF+KK+QFYERVGET+  LNAQKTI+K  +K R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLKF+LKE KQM
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK--NKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQM

Query:  GTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM
        GTVLNHPAFQADPL AIHLHLESTQPVEE KKK TN+NGSKKRKEKK KA+A P  M
Subjt:  GTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM

A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X2

1.17e-76

82.05

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKN-KLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMG
        MGKP SRSDSKSKAERKF+KK+QFYERVGET+  LNAQKTI+KN K R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLKF+LKE KQMG
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKN-KLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMG

Query:  TVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM
        TVLNHPAFQADPL AIHLHLESTQPVEE KKK TN+NGSKKRKEKK KA+A P  M
Subjt:  TVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

2.30e-97

98.73

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK KLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT

Query:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLNHPAFQADPLGAIHLHL+STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like

3.27e-97

98.73

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK KLRRRKRDLKAFDLTALSEFLPGLK PKQKTSDTELKVNCKSRLKFVLKETKQMGT
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT

Query:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

2.4e-33

55.33

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTI-TKNKLRRRKRDLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLKFVLKETKQM
        MGKP+  S+  +K+++KFEKK+QFY +V +T+ +L+ QK I  K K+R R++ LKA+DLT LSEFLP   A  K      ELK+NCK R K VL E +++
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTI-TKNKLRRRKRDLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLKFVLKETKQM

Query:  GTVLNHPAFQADPLGAIHLHLESTQ-PVEETKKKKTNRNGSKKRKEKKSK
          VL+HPAFQADP+G+I  HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  GTVLNHPAFQADPLGAIHLHLESTQ-PVEETKKKKTNRNGSKKRKEKKSK

AT2G01640.2 unknown protein

2.4e-33

55.33

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTI-TKNKLRRRKRDLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLKFVLKETKQM
        MGKP+  S+  +K+++KFEKK+QFY +V +T+ +L+ QK I  K K+R R++ LKA+DLT LSEFLP   A  K      ELK+NCK R K VL E +++
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTI-TKNKLRRRKRDLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLKFVLKETKQM

Query:  GTVLNHPAFQADPLGAIHLHLESTQ-PVEETKKKKTNRNGSKKRKEKKSK
          VL+HPAFQADP+G+I  HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  GTVLNHPAFQADPLGAIHLHLESTQ-PVEETKKKKTNRNGSKKRKEKKSK

Sequences

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CDS sequence

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ATGGGCAAACCAACCTCTCGGTCGGATTCGAAATCTAAAGCCGAACGCAAATTTGAAAAGAAGATACAATTCTATGAGAGAGTTGGTGAAACTATTGCTACCTTAAATGC
TCAAAAGACTATTACTAAGAATAAGCTTCGAAGACGTAAAAGGGATTTGAAGGCTTTCGATCTTACTGCTCTATCAGAATTTCTTCCTGGATTGAAGGCTCCCAAACAAA
AAACTTCTGACACCGAGTTAAAAGTAAATTGCAAGTCTAGGCTAAAGTTTGTATTGAAGGAAACAAAGCAAATGGGTACAGTTCTTAATCACCCTGCATTCCAGGCAGAT
CCCTTGGGAGCTATTCATCTACATTTAGAGAGCACACAACCAGTTGAGGAAACGAAGAAAAAGAAGACGAACAGAAATGGGAGCAAGAAAAGGAAAGAGAAAAAGTCCAA
AGCCACTGCAAAACCTTCATCTATGGAGATGTGA

mRNA sequence

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Protein sequence

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MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKNKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQAD
PLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

Csor.00g217870 (gene) of Silver-seed gourd (wild; sororia) v1 genome