; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Csor.00g219230 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g219230
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionsigma factor binding protein 1, chloroplastic-like
Genome locationCsor_Chr04:6789267..6789647
RNA-Seq ExpressionCsor.00g219230
SyntenyCsor.00g219230
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022957180.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]2.80e-81100Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPPEDDFVLQNFDASFEEMLHGFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

XP_022986090.1 uncharacterized protein LOC111483942 [Cucurbita maxima]2.90e-7493.65Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKK PKRTKKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESF+ELIA DRNFQSSAFLDYQILGDDNLI+RDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPP DD VLQNFDASFEEML GFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

XP_023514832.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]1.14e-8099.21Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIA DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPPEDDFVLQNFDASFEEMLHGFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

XP_023542375.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]3.72e-4871.11Show/hide
Query:  MDVIGKKPPKRT--KKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA
        MD+  KK  KR   K +AA FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAA    DRN       +SAFLDYQ+LGDD+L D DHRLVA
Subjt:  MDVIGKKPPKRT--KKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA

Query:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF
        GKIETAAYQS VAPPED  V+QNFDASF EM   F
Subjt:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF

XP_038892750.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]1.53e-4874.63Show/hide
Query:  MDVIGKKPPKRTKKSAAG-FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA---DRNFQSSA---FLDYQILGDDNLIDRDHRLVAGKIE
        M+V GKK PKR+KKSAA  FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELIA+   DRN QSSA   FLDYQ+LGDD+L      LV+GK+E
Subjt:  MDVIGKKPPKRTKKSAAG-FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA---DRNFQSSA---FLDYQILGDDNLIDRDHRLVAGKIE

Query:  TAAYQSLVA--PPEDDF-VLQNFDASFEEMLHGF
        TAAY+S VA  PP DD  VLQNFDASF EM HGF
Subjt:  TAAYQSLVA--PPEDDF-VLQNFDASFEEMLHGF

TrEMBL top hitse value%identityAlignment
A0A6J1CBX0 uncharacterized protein LOC1110101494.88e-4669.57Show/hide
Query:  MDVIGKKPPK--RTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRNF----QSSAFLDYQIL--GDDNLIDRD--HR
        MDVIG+K  K  R+KKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELIAA    DRN      S+AFLD+Q+L   DD+ IDRD  HR
Subjt:  MDVIGKKPPK--RTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRNF----QSSAFLDYQIL--GDDNLIDRD--HR

Query:  LVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF
        LV+G IE++ YQS +APP DD +LQNFDA+F +M HGF
Subjt:  LVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like5.15e-4870.37Show/hide
Query:  MDVIGKKPPKRT--KKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA
        MD+  KK  KR   K +AA FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAA    DRN       +SAFLDYQ+LGDD+L D DHRLVA
Subjt:  MDVIGKKPPKRT--KKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA

Query:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF
        GKIETAAYQS VAPPED  V++NFDASF EM   F
Subjt:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF

A0A6J1GZT9 sigma factor binding protein 1, chloroplastic-like1.35e-81100Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPPEDDFVLQNFDASFEEMLHGFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like7.32e-4870.37Show/hide
Query:  MDVIGKKPPKRT--KKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA
        MD+  K+  KR   K +AA FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAA    DRN       +SAFLDYQ+LGDD+L D DHRLVA
Subjt:  MDVIGKKPPKRT--KKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA

Query:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF
        GKIETAAYQS VAPPED  V+QNFDASF EM   F
Subjt:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF

A0A6J1JD32 uncharacterized protein LOC1114839421.40e-7493.65Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKK PKRTKKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESF+ELIA DRNFQSSAFLDYQILGDDNLI+RDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPP DD VLQNFDASFEEML GFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.9e-0457.78Show/hide
Query:  PPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        PPK+ +KS       KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  PPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

Q9LDH1 Sigma factor binding protein 1, chloroplastic1.5e-0636.15Show/hide
Query:  IGKKPPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILGDDNLIDRD-HRLVAGKIETAA
        + +K PK+ KK+ +     KV YIS+PM+V+T ASKFR LVQ+LTGQD+     E      + D N    A         +NL  R  H+   G+ ++  
Subjt:  IGKKPPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILGDDNLIDRD-HRLVAGKIETAA

Query:  YQSLVAPPEDDFVLQNFDASFEEMLHGFFA
        Y+ L A  ED F+     A F     GFF+
Subjt:  YQSLVAPPEDDFVLQNFDASFEEMLHGFFA

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.3e-0557.78Show/hide
Query:  PPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        PPK+ +KS       KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  PPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 11.1e-0736.15Show/hide
Query:  IGKKPPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILGDDNLIDRD-HRLVAGKIETAA
        + +K PK+ KK+ +     KV YIS+PM+V+T ASKFR LVQ+LTGQD+     E      + D N    A         +NL  R  H+   G+ ++  
Subjt:  IGKKPPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILGDDNLIDRD-HRLVAGKIETAA

Query:  YQSLVAPPEDDFVLQNFDASFEEMLHGFFA
        Y+ L A  ED F+     A F     GFF+
Subjt:  YQSLVAPPEDDFVLQNFDASFEEMLHGFFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTT
TAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAA
TCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTG
CAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTT
TAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAA
TCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTG
CAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA
Protein sequenceShow/hide protein sequence
MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVL
QNFDASFEEMLHGFFA