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Csor.00g219320 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g219320
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionDNA-directed RNA polymerase
Genome locationCsor_Chr04:6747694..6748421
RNA-Seq ExpressionCsor.00g219320
SyntenyCsor.00g219320
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601111.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia]2.50e-58100Show/hide
Query:  MVVKPPEDASMLRHPHSLIIFVSFGCIEAELQFSAIVRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDPNPWHCGMDFSGSN
        MVVKPPEDASMLRHPHSLIIFVSFGCIEAELQFSAIVRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDPNPWHCGMDFSGSN
Subjt:  MVVKPPEDASMLRHPHSLIIFVSFGCIEAELQFSAIVRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDPNPWHCGMDFSGSN

TYK03826.1 DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucumis melo var. makuwa]1.73e-1353.49Show/hide
Query:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        MVVK PEDAS         +P    I   F+      A  +F  +     VRGLVK+HLDSFNYF NTEI KIVKAND IESSTDP
Subjt:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

XP_004141655.2 DNA-directed RNA polymerase III subunit 2 [Cucumis sativus]6.28e-1253.49Show/hide
Query:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        MVVK PEDAS         +P    I   F+      A  +F  +     VRGLVK+HLDSFNYF NTEI KIVKAND IESSTDP
Subjt:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

XP_008462447.1 PREDICTED: DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucumis melo]6.28e-1253.49Show/hide
Query:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        MVVK PEDAS         +P    I   F+      A  +F  +     VRGLVK+HLDSFNYF NTEI KIVKAND IESSTDP
Subjt:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

XP_022138958.1 DNA-directed RNA polymerase III subunit 2 [Momordica charantia]2.46e-1252.33Show/hide
Query:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        MVV+P EDAS +       HP    I   F+      A  +F  +     VRGLV++HLDSFNYF NTEI KIVKAND IESSTDP
Subjt:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

TrEMBL top hitse value%identityAlignment
A0A1S3CIH7 DNA-directed RNA polymerase subunit beta3.04e-1253.49Show/hide
Query:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        MVVK PEDAS         +P    I   F+      A  +F  +     VRGLVK+HLDSFNYF NTEI KIVKAND IESSTDP
Subjt:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

A0A5A7UBS2 DNA-directed RNA polymerase subunit beta3.05e-1253.49Show/hide
Query:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        MVVK PEDAS         +P    I   F+      A  +F  +     VRGLVK+HLDSFNYF NTEI KIVKAND IESSTDP
Subjt:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

A0A5D3C055 DNA-directed RNA polymerase8.36e-1453.49Show/hide
Query:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        MVVK PEDAS         +P    I   F+      A  +F  +     VRGLVK+HLDSFNYF NTEI KIVKAND IESSTDP
Subjt:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

A0A6J1CEJ1 DNA-directed RNA polymerase subunit beta1.19e-1252.33Show/hide
Query:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        MVV+P EDAS +       HP    I   F+      A  +F  +     VRGLV++HLDSFNYF NTEI KIVKAND IESSTDP
Subjt:  MVVKPPEDASMLR------HPHSLII---FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

A0A6J1H055 DNA-directed RNA polymerase8.59e-1251.16Show/hide
Query:  MVVKPPEDASM----LRHPHSLII-----FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        MVVKP  DASM    +  P+ +       F       A  +F  +     VRGLVKRHLDSFNYFAN EI KIVKAN  I+SSTDP
Subjt:  MVVKPPEDASM----LRHPHSLII-----FVSFGCIEAELQFSAI-----VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

SwissProt top hitse value%identityAlignment
F4KD38 DNA-directed RNA polymerase III subunit 24.6e-0770.27Show/hide
Query:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDPN
        VRGLVK+HLDSFNYF N  I+KIVKAN  I S+ DP+
Subjt:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDPN

P22276 DNA-directed RNA polymerase III subunit RPC21.0e-0663.89Show/hide
Query:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        V+GLVK+HLDSFNYF +T++ KI+KAN  I S  DP
Subjt:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

P25167 DNA-directed RNA polymerase III subunit RPC21.7e-0661.11Show/hide
Query:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        V+GLVK+H+DSFN+F N +I KIVKAN+ + S  DP
Subjt:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

P59470 DNA-directed RNA polymerase III subunit RPC27.8e-0763.89Show/hide
Query:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        V+GLVK+H+DSFNYF N EI KI+KAN+ + S  DP
Subjt:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

Q9NW08 DNA-directed RNA polymerase III subunit RPC27.8e-0763.89Show/hide
Query:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP
        V+GLVK+H+DSFNYF N EI KI+KAN+ + S  DP
Subjt:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDP

Arabidopsis top hitse value%identityAlignment
AT5G45140.1 nuclear RNA polymerase C23.3e-0870.27Show/hide
Query:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDPN
        VRGLVK+HLDSFNYF N  I+KIVKAN  I S+ DP+
Subjt:  VRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGAAGCCACCGGAAGACGCTTCGATGTTAAGGCATCCGCATTCTCTCATTATCTTCGTCTCTTTTGGCTGTATCGAAGCTGAATTGCAGTTTTCTGCCATTGT
AAGAGGTCTGGTTAAGCGACACTTGGATTCCTTTAACTACTTCGCGAATACAGAGATAAACAAGATTGTCAAGGCAAATGATTGCATTGAATCCAGCACTGATCCGAACC
CCTGGCACTGTGGAATGGATTTCAGTGGTTCAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGAAGCCACCGGAAGACGCTTCGATGTTAAGGCATCCGCATTCTCTCATTATCTTCGTCTCTTTTGGCTGTATCGAAGCTGAATTGCAGTTTTCTGCCATTGT
AAGAGGTCTGGTTAAGCGACACTTGGATTCCTTTAACTACTTCGCGAATACAGAGATAAACAAGATTGTCAAGGCAAATGATTGCATTGAATCCAGCACTGATCCGAACC
CCTGGCACTGTGGAATGGATTTCAGTGGTTCAAATTGA
Protein sequenceShow/hide protein sequence
MVVKPPEDASMLRHPHSLIIFVSFGCIEAELQFSAIVRGLVKRHLDSFNYFANTEINKIVKANDCIESSTDPNPWHCGMDFSGSN