CuGenDBv2

Gene ID	Csor.00g222010
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	transcriptional activator DEMETER-like
Genome location	Csor_Chr02:8213335..8213936
RNA-Seq Expression	Csor.00g222010
Synteny	Csor.00g222010
Gene Ontology terms	GO:0000278 - mitotic cell cycle (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0080111 - DNA demethylation (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0045004 - DNA replication proofreading (biological process) GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0006349 - regulation of gene expression by genetic imprinting (biological process) GO:0006306 - DNA methylation (biological process) GO:0006287 - base-excision repair, gap-filling (biological process) GO:0006297 - nucleotide-excision repair, DNA gap filling (biological process) GO:0006272 - leading strand elongation (biological process) GO:0043078 - polar nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008622 - epsilon DNA polymerase complex (cellular component) GO:0019104 - DNA N-glycosylase activity (molecular function) GO:0035514 - DNA demethylase activity (molecular function) GO:0008310 - single-stranded DNA 3'-5' exodeoxyribonuclease activity (molecular function) GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0000166 - nucleotide binding (molecular function)
InterPro domains	IPR028925 - Demeter, RRM-fold domain IPR044811 - DNA glycosylase, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6606006.1 Protein ROS1A, partial [Cucurbita argyrosperma subsp. sororia]

5.50e-86

100

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQKP
        RLHRQTNAAAKARANKNTNQKP
Subjt:  RLHRQTNAAAKARANKNTNQKP

KAG7035957.1 Protein ROS1, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.11e-62

88.52

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQK             GFICVRGFDRRTRTPKRLTE
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQKP
        RLHRQTNAAAKARANKNTNQ P
Subjt:  RLHRQTNAAAKARANKNTNQKP

XP_022958534.1 protein ROS1-like [Cucurbita moschata]

2.52e-61

86.89

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQK             GFICVRGFDRRTRTPKRLTE
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQKP
        RLHRQTN+AAKARANKNT+ KP
Subjt:  RLHRQTNAAAKARANKNTNQKP

XP_022996087.1 protein ROS1-like [Cucurbita maxima]

2.11e-62

88.52

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQK             GFICVRGFDRRTRTPKRLTE
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQKP
        RLHRQTNAAAKARANKNT+QKP
Subjt:  RLHRQTNAAAKARANKNTNQKP

XP_023532993.1 protein ROS1-like [Cucurbita pepo subsp. pepo]

9.80e-62

87.7

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQK             GFICVRGFDRRTRTPKRLTE
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQKP
        RLHRQTNAAAKARANKNT+ KP
Subjt:  RLHRQTNAAAKARANKNTNQKP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C8A0 protein ROS1-like isoform X1

6.11e-52

76.03

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDE+SKNPI + REWIW+LPRRI YFGTST TIFRGL  +DIQYCFQK             GFICVRGFDRRTRTPKRL E
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQK
        RLHR TNA+ KARANKN +QK
Subjt:  RLHRQTNAAAKARANKNTNQK

A0A1S4E1Z0 protein ROS1-like isoform X2

6.11e-52

76.03

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDE+SKNPI + REWIW+LPRRI YFGTST TIFRGL  +DIQYCFQK             GFICVRGFDRRTRTPKRL E
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQK
        RLHR TNA+ KARANKN +QK
Subjt:  RLHRQTNAAAKARANKNTNQK

A0A5A7SVP4 Protein ROS1-like isoform X1

6.11e-52

76.03

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDE+SKNPI + REWIW+LPRRI YFGTST TIFRGL  +DIQYCFQK             GFICVRGFDRRTRTPKRL E
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQK
        RLHR TNA+ KARANKN +QK
Subjt:  RLHRQTNAAAKARANKNTNQK

A0A6J1H5D5 protein ROS1-like

1.22e-61

86.89

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQK             GFICVRGFDRRTRTPKRLTE
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQKP
        RLHRQTN+AAKARANKNT+ KP
Subjt:  RLHRQTNAAAKARANKNTNQKP

A0A6J1K0Y6 protein ROS1-like

1.02e-62

88.52

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQK             GFICVRGFDRRTRTPKRLTE
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQKP
        RLHRQTNAAAKARANKNT+QKP
Subjt:  RLHRQTNAAAKARANKNTNQKP

SwissProt top hits

e value

%identity

Alignment

B8YIE8 Protein ROS1C

4.8e-26

49.17

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQVNEVFAD  SS NPI++ RE +W+L RR+VYFGTS  TIF+GL  ++IQ+CF +             GF+CVRGF+  TR P+ L  
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNTNQ
          H   +   ++     T Q
Subjt:  RLHRQTNAAAKARANKNTNQ

C7IW64 Protein ROS1A

3.2e-30

56.78

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQVNEVFAD +SS+NPI V R WIW+LPRR VYFGTS  TIF+GL  ++IQ+CF +             GF+CVRGFDR +R P+ L  
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANKNT
        RLH     A+K   NK +
Subjt:  RLHRQTNAAAKARANKNT

Q8LK56 Transcriptional activator DEMETER

1.1e-30

57.76

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQVNE+FAD ESS  PI V R+WIWDLPRR VYFGTS  +IFRGL  + IQ+CF K             GF+CVRGF+++TR P+ L  
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANK
        RLH     A+K + NK
Subjt:  RLHRQTNAAAKARANK

Q9SJQ6 DNA glycosylase/AP lyase ROS1

2.1e-29

58.26

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQVNEVFAD  SS NPI+V RE IW+LPRR VYFGTS  TIF+GL  + IQ CF K             G++CVRGFDR+TR PK L  
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARAN
        RLH   +     +AN
Subjt:  RLHRQTNAAAKARAN

Q9SR66 DEMETER-like protein 2

1.4e-25

54.37

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQ NEVFAD +SS NPI V  E IWDL RR+ Y G+S ++I +GL ++ I+Y FQ+             G++CVRGFDR  R PK L +
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLH
        RLH
Subjt:  RLH

Arabidopsis top hits

e value

%identity

Alignment

AT2G36490.1 demeter-like 1

1.5e-30

58.26

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQVNEVFAD  SS NPI+V RE IW+LPRR VYFGTS  TIF+GL  + IQ CF K             G++CVRGFDR+TR PK L  
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARAN
        RLH   +     +AN
Subjt:  RLHRQTNAAAKARAN

AT3G10010.1 demeter-like 2

1.0e-26

54.37

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQ NEVFAD +SS NPI V  E IWDL RR+ Y G+S ++I +GL ++ I+Y FQ+             G++CVRGFDR  R PK L +
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLH
        RLH
Subjt:  RLH

AT4G34060.1 demeter-like protein 3

1.8e-20

47.57

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQ NEVFAD E+S NPI   RE    L +R +Y G++  +IF+ L    I+ CF             + GF+C+R FDR+ R PK L  
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLH
        RLH
Subjt:  RLH

AT5G04560.1 HhH-GPD base excision DNA repair family protein

7.9e-32

57.76

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQVNE+FAD ESS  PI V R+WIWDLPRR VYFGTS  +IFRGL  + IQ+CF K             GF+CVRGF+++TR P+ L  
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANK
        RLH     A+K + NK
Subjt:  RLHRQTNAAAKARANK

AT5G04560.2 HhH-GPD base excision DNA repair family protein

7.9e-32

57.76

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Query:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE
        MRG FPLNGTYFQVNE+FAD ESS  PI V R+WIWDLPRR VYFGTS  +IFRGL  + IQ+CF K             GF+CVRGF+++TR P+ L  
Subjt:  MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTE

Query:  RLHRQTNAAAKARANK
        RLH     A+K + NK
Subjt:  RLHRQTNAAAKARANK

Sequences

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CDS sequence

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ATGAGAGGCAAATTCCCATTAAACGGGACATATTTTCAAGTCAACGAGGTTTTTGCCGATGACGAATCAAGTAAAAACCCCATTAGCGTTTTTAGGGAATGGATATGGGA
TCTCCCGCGAAGAATTGTGTATTTCGGAACCTCAACGGCAACAATTTTCAGAGGCTTGGGAATTGATGATATCCAGTACTGCTTCCAAAAAGATTTAGCAGATGAGTTTT
GTCGTTTGTGTCGTTTTGTAGGATTCATTTGTGTGAGAGGATTCGATCGAAGAACACGAACTCCAAAACGACTAACGGAGCGGTTGCACAGACAAACCAACGCAGCAGCT
AAAGCTAGGGCAAACAAAAACACCAATCAGAAACCTTGA

mRNA sequence

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Protein sequence

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MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAA
KARANKNTNQKP

Csor.00g222010 (gene) of Silver-seed gourd (wild; sororia) v1 genome