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Csor.00g282970 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g282970
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionreticulocalbin-2 isoform X1
Genome locationCsor_Chr16:167250..167531
RNA-Seq ExpressionCsor.00g282970
SyntenyCsor.00g282970
Gene Ontology termsGO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576643.1 hypothetical protein SDJN03_24217, partial [Cucurbita argyrosperma subsp. sororia]1.49e-65100Show/hide
Query:  MESQSLGLCLICRHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDLVFYFDRYKSCNSPTPLDFDTKMSLGHSPNKVL
        MESQSLGLCLICRHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDLVFYFDRYKSCNSPTPLDFDTKMSLGHSPNKVL
Subjt:  MESQSLGLCLICRHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDLVFYFDRYKSCNSPTPLDFDTKMSLGHSPNKVL

TYK11288.1 reticulocalbin-2 [Cucumis melo var. makuwa]5.15e-2181.63Show/hide
Query:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL
        + MDHDRDGKLNFDEFLHHTY+IY +YIEF+T+GDD+P+AEEKFDELDL
Subjt:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL

XP_008455987.1 PREDICTED: reticulocalbin-2 [Cucumis melo]9.77e-2283.67Show/hide
Query:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL
        + MDHDRDGKLNFDEFLHHTYDIY +YIEF+T+GDD+P+AEEKFDELDL
Subjt:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL

XP_011651314.1 reticulocalbin-2 [Cucumis sativus]2.62e-2183.67Show/hide
Query:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL
        + MDHD+DGKLNFDEFLHHTYDIY +YIEF+T+G+DVPSAEEKFDELDL
Subjt:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL

XP_022945266.1 45 kDa calcium-binding protein isoform X2 [Cucurbita moschata]3.76e-2081.63Show/hide
Query:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL
        + MD+DRDGKL+FDEFLHH YDIY SYIEF+T+GDDVP+AEEKFDELDL
Subjt:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL

TrEMBL top hitse value%identityAlignment
A0A0A0LAH3 Uncharacterized protein1.27e-2183.67Show/hide
Query:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL
        + MDHD+DGKLNFDEFLHHTYDIY +YIEF+T+G+DVPSAEEKFDELDL
Subjt:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL

A0A1S3C255 reticulocalbin-24.73e-2283.67Show/hide
Query:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL
        + MDHDRDGKLNFDEFLHHTYDIY +YIEF+T+GDD+P+AEEKFDELDL
Subjt:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL

A0A5A7U5L5 Reticulocalbin-24.73e-2283.67Show/hide
Query:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL
        + MDHDRDGKLNFDEFLHHTYDIY +YIEF+T+GDD+P+AEEKFDELDL
Subjt:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL

A0A5D3CJD2 Reticulocalbin-22.50e-2181.63Show/hide
Query:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL
        + MDHDRDGKLNFDEFLHHTY+IY +YIEF+T+GDD+P+AEEKFDELDL
Subjt:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL

A0A6J1G0D5 45 kDa calcium-binding protein isoform X21.82e-2081.63Show/hide
Query:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL
        + MD+DRDGKL+FDEFLHH YDIY SYIEF+T+GDDVP+AEEKFDELDL
Subjt:  RHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGCCAAAGCCTCGGCTTGTGTTTAATATGCAGGCACATGGACCATGACAGAGATGGAAAGCTCAATTTTGATGAATTTCTCCACCATACCTATGATATATACAA
CAGCTATATCGAATTCCAAACTCGAGGGGACGATGTACCGAGCGCGGAAGAGAAGTTCGATGAGCTTGATCTTGTTTTCTATTTTGATAGATACAAGAGCTGTAACTCAC
CCACCCCTCTGGATTTTGATACTAAGATGAGCCTTGGTCACTCTCCTAACAAGGTACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGCCAAAGCCTCGGCTTGTGTTTAATATGCAGGCACATGGACCATGACAGAGATGGAAAGCTCAATTTTGATGAATTTCTCCACCATACCTATGATATATACAA
CAGCTATATCGAATTCCAAACTCGAGGGGACGATGTACCGAGCGCGGAAGAGAAGTTCGATGAGCTTGATCTTGTTTTCTATTTTGATAGATACAAGAGCTGTAACTCAC
CCACCCCTCTGGATTTTGATACTAAGATGAGCCTTGGTCACTCTCCTAACAAGGTACTGTAA
Protein sequenceShow/hide protein sequence
MESQSLGLCLICRHMDHDRDGKLNFDEFLHHTYDIYNSYIEFQTRGDDVPSAEEKFDELDLVFYFDRYKSCNSPTPLDFDTKMSLGHSPNKVL