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Csor.00g299520 (gene) of Silver-seed gourd (wild; sororia) v1 genome

Gene IDCsor.00g299520
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionprotein RADIALIS-like 4
Genome locationCsor_Chr05:1126162..1126461
RNA-Seq ExpressionCsor.00g299520
SyntenyCsor.00g299520
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065228.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]2.08e-5184.95Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSG+SSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

KAG6598451.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]8.03e-66100Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYRAFYS
        MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYRAFYS
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYRAFYS

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]2.66e-5184.95Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSG+SSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]3.78e-6098.92Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MATSPFKSSGSSSSSWTPKQNKKFE+ALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]2.77e-5389.25Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSGSSSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKPIVSNG+VY DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

TrEMBL top hitse value%identityAlignment
A0A1S3BBS2 protein RADIALIS-like 41.29e-5184.95Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSG+SSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

A0A5A7VC75 Protein RADIALIS-like 41.01e-5184.95Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSG+SSSSWT KQNKKFE+AL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

A0A6J1GIE7 protein RADIALIS-like 41.06e-5084.95Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA++ F+SSGSSSSSWTPKQNKKFE+ALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

A0A6J1HFA3 protein RADIALIS-like 41.83e-6098.92Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MATSPFKSSGSSSSSWTPKQNKKFE+ALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

A0A6J1K2Q1 protein RADIALIS-like 41.83e-6098.92Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MATSPFKSSGSSSSSWTPKQNKKFE+ALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.4e-2358.43Show/hide
Query:  SGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI--VSNGTVYGDEQRYR
        S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  IE+G +P PNY+     +NG +  +E+R R
Subjt:  SGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI--VSNGTVYGDEQRYR

Q1A173 Protein RADIALIS-like 63.7e-2463.86Show/hide
Query:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD
        +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++IE+G++PLPNYK   SN     D
Subjt:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD

Q58FS3 Transcription factor RADIALIS5.9e-2254.55Show/hide
Query:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYR
        S+  S   W+ K+NK FE ALA+Y +DTPDRW  VAR V G+T EEVK+HY+ILV+D+ +IESGK+P PNY+   + G +  DE+R+R
Subjt:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYR

Q8GW75 Protein RADIALIS-like 56.3e-2471.62Show/hide
Query:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI
        SS SSSSSWT KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEVKRHYDILV+DLM+IE   +PLP YK +
Subjt:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI

Q9SIJ5 Protein RADIALIS-like 27.7e-2253.54Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRYRA
        MA+    S G  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE KR YD+LV+D+  IE+G +P P+YK    N   G +  +E+R R+
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRYRA

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.5e-2571.62Show/hide
Query:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI
        SS SSSSSWT KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEVKRHYDILV+DLM+IE   +PLP YK +
Subjt:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI

AT1G75250.1 RAD-like 61.2e-2560.87Show/hide
Query:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD-EQRYRAFY
        +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++IE+G++PLPNYK   SN     D + RY   Y
Subjt:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD-EQRYRAFY

AT1G75250.2 RAD-like 62.6e-2563.86Show/hide
Query:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD
        +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++IE+G++PLPNYK   SN     D
Subjt:  SSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD

AT2G21650.1 Homeodomain-like superfamily protein5.5e-2353.54Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRYRA
        MA+    S G  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE KR YD+LV+D+  IE+G +P P+YK    N   G +  +E+R R+
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRYRA

AT4G39250.1 RAD-like 11.7e-2458.43Show/hide
Query:  SGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI--VSNGTVYGDEQRYR
        S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  IE+G +P PNY+     +NG +  +E+R R
Subjt:  SGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI--VSNGTVYGDEQRYR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACAAGCCCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCGTGGACGCCTAAGCAAAACAAAAAATTTGAGAACGCTCTGGCTTTATATCCCGAGGACACACCAGA
CCGGTGGCAAAAGGTGGCCAGGACAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGATAC
CTCTCCCCAACTACAAGCCCATTGTATCCAACGGTACAGTGTATGGTGATGAGCAGAGGTACCGAGCTTTCTACTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAACAAGCCCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCGTGGACGCCTAAGCAAAACAAAAAATTTGAGAACGCTCTGGCTTTATATCCCGAGGACACACCAGA
CCGGTGGCAAAAGGTGGCCAGGACAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGATAC
CTCTCCCCAACTACAAGCCCATTGTATCCAACGGTACAGTGTATGGTGATGAGCAGAGGTACCGAGCTTTCTACTCTTAG
Protein sequenceShow/hide protein sequence
MATSPFKSSGSSSSSWTPKQNKKFENALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRYRAFYS